Browse Element(s) Details


Os.53505.2.S1_at

Description gb:AK072994.1
DB_XREF= gi:32983017
TID=Os.53505.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147O19, full insert sequence.
FL= gb:AK072994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37080Os.14337.1.S1_at11/112+22401836..22406436ASC1-like protein 1, putative, expressed
LOC_Os02g37090Os.6566.1.S1_at11/112+22420365..22423033hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g37100Os.53505.2.S1_at11/112+22423646..22426767hypothetical protein
LOC_Os02g37100OsAffx.2887.1.S1_at10/112+22423646..22426767hypothetical protein
LOC_Os02g37110NANA2+22427812..22428453hypothetical protein
LOC_Os02g37120Os.27022.1.A1_at11/112+22430203..22434986expressed protein
LOC_Os02g37120Os.27022.2.S1_at11/112+22430203..22434986expressed protein
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53505.2.S1_at--53--1991Chr02:22423937..22423961 (25 bp)
ACTGCCGACACTGCGACGGCAGAGA
LOC_Os02g37100
Os.53505.2.S1_at--628--7651Chr02:22423985..22424009 (25 bp)
GGGAGGCCTAACATGTTGATTGCTA
LOC_Os02g37100
Os.53505.2.S1_at--902--8791Chr02:22423998..22424022 (25 bp)
TGTTGATTGCTACCGGTTAAACCGC
LOC_Os02g37100
Os.53505.2.S1_at--963--6751Chr02:22424013..22424037 (25 bp)
GTTAAACCGCAGTAGTCCTGCCGTA
LOC_Os02g37100
Os.53505.2.S1_at--376--1191Chr02:22424023..22424047 (25 bp)
AGTAGTCCTGCCGTAGACTGCTCGC
LOC_Os02g37100
Os.53505.2.S1_at--797--5711Chr02:22424038..22424062 (25 bp)
GACTGCTCGCCAATTGTCGGTCTGA
LOC_Os02g37100
Os.53505.2.S1_at--1046--3151Chr02:22424049..22424073 (25 bp)
AATTGTCGGTCTGACCATCGGGATC
LOC_Os02g37100
Os.53505.2.S1_at--540--7651Chr02:22424068..22424092 (25 bp)
GGGATCCAAAAATCACATATCGACG
LOC_Os02g37100
Os.53505.2.S1_at--633--9371Chr02:22424087..22424111 (25 bp)
TCGACGAGACGAAACTCTTGAAAGT
LOC_Os02g37100
Os.53505.2.S1_at--985--8751Chr02:22424148..22424172 (25 bp)
TGTATCTAAAGCACTCCTCTGTCAA
LOC_Os02g37100
Os.53505.2.S1_at--66--1511Chr02:22424157..22424181 (25 bp)
AGCACTCCTCTGTCAACTAGTATTG
LOC_Os02g37100
Target Sequence 
ACTGCCGACACTGCGACGGCAGAGACGGGAAGGGGAGGAGAGGGGCGGGGGAGGCCTAACATGTTGATTGCTACCGGTTA
AACCGCAGTAGTCCTGCCGTAGACTGCTCGCCAATTGTCGGTCTGACCATCGGGATCCAAAAATCACATATCGACGAGAC
GAAACTCTTGAAAGTAGATCAACTTTATTGCATCAATATGTGTTTACAAAGTGTATCTAAAGCACTCCTCTGTCAACTAG
TATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53505.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis