Browse Element(s) Details


Os.53588.1.S1_at

Description gb:AK073431.1
DB_XREF= gi:32983454
TID=Os.53588.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042D10, full insert sequence.
FL= gb:AK073431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4148011/11SAM domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein
LOC_Os08g41470Os.17601.1.S1_at11/118+26059851..26063253expressed protein
LOC_Os08g41480Os.53588.1.S1_at11/118+26065378..26068696SAM domain family protein, expressed
LOC_Os08g41490OsAffx.29623.1.S1_at11/118+26070348..26075782hypothetical protein
LOC_Os08g41490OsAffx.29623.2.S1_s_at7/118+26070348..26075782hypothetical protein
LOC_Os08g41500OsAffx.29620.1.S1_at10/118+26081563..26086104UBA/TS-N domain containing protein, expressed
LOC_Os08g41510OsAffx.29621.1.S1_at11/118+26089944..26093295hypothetical protein
LOC_Os08g41510Os.10442.1.S2_at1/118+26089944..26093295hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53588.1.S1_at--498--8411Chr08:26066694..26066718 (25 bp)
GGCCCTTCCTGCTACTAAGAAAGTG
LOC_Os08g41480
Os.53588.1.S1_at--1057--8971Chr08:26066717..26066741 (25 bp)
TGAACGAACCATCTGCACCAAAGCA
LOC_Os08g41480
Os.53588.1.S1_at--1009--1391Chr08:26067133..26067157 (25 bp)
AGACTGATTCCTCTCTTGATAGATT
LOC_Os08g41480
Os.53588.1.S1_at--681--5291Chr08:26067300..26067324 (25 bp)
GAAGGCTCTGCTTCACATGAATGAG
LOC_Os08g41480
Os.53588.1.S1_at--234--1271Chr08:26068322..26068346 (25 bp)
AGATATTGTCAGCATTGGCTTCCAA
LOC_Os08g41480
Os.53588.1.S1_at--14--8011Chr08:26068431..26068455 (25 bp)
GGATGTGTGCACTGCCAGGATCAAC
LOC_Os08g41480
Os.53588.1.S1_at--461--1171Chr08:26068459..26068483 (25 bp)
AGTAACCCCATTTCTTGTATAAGAT
LOC_Os08g41480
Os.53588.1.S1_at--967--1431Chr08:26068509..26068533 (25 bp)
AGAACTGTGATCTAGCAGTGCTGTT
LOC_Os08g41480
Os.53588.1.S1_at--18--6331Chr08:26068605..26068629 (25 bp)
GATGCATCGGAATTATTTTCCCGTA
LOC_Os08g41480
Os.53588.1.S1_at--865--10371Chr08:26068620..26068644 (25 bp)
TTTTCCCGTATCATGTAAACCCAGC
LOC_Os08g41480
Os.53588.1.S1_at--1072--7031Chr08:26068634..26068658 (25 bp)
GTAAACCCAGCCCATTATTAGCGTG
LOC_Os08g41480
Target Sequence 
GGCCCTTCCTGCTACTAAGAAAGTGAACGAACCATCTGCACCAAAGCAATGCCAGGAAAAGACTGATTCCTCTCTTGATA
GATTACTGAAGTCTCTTGATGTAGAGAAGTACTCAATAAATTTTCAGGCTGAAGAGGTTGATATGAAGGCTCTGCTTCAC
ATGAATGAGGAAGACATGAAGTCTTTAGGAATTCCAATGGGGCCTCGGAAAAAGATATTGTCAGCATTGGCTTCCAAGAA
GAAGAAATTATCAAAATCATTACCTACCAGTTGAATAGTTGATGCATCTTTAAACGTAGTAGCTAGATGACATGTTGATT
TGGATGTGTGCACTGCCAGGATCAACCCAAGTAACCCCATTTCTTGTATAAGATTTCCATCGAGATGATGTACAAATAGA
GAACTGTGATCTAGCAGTGCTGTTGTGAGGCAATTAACAGCTTGTCAATAGGAGTTATGTTCTGATATTAAGCGGATATT
TAGATGCCAACATATGATGCATCGGAATTATTTTCCCGTATCATGTAAACCCAGCCCATTATTAGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis