Browse Element(s) Details


Os.53658.1.S1_at

Description gb:AK073788.1
DB_XREF= gi:32983811
TID=Os.53658.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068K04, full insert sequence.
FL= gb:AK073788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g402508/11hypothetical protein
LOC_Os12g427101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein
LOC_Os04g40200OsAffx.26403.1.S1_at11/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40200OsAffx.32172.1.S1_s_at1/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40210NANA4+23704411..23705266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40220Os.27102.1.S1_x_at1/114+23708417..23711214transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40230NANA4+23713603..23714869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein
LOC_Os04g40260Os.54774.1.S1_x_at2/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40260Os.54774.1.S1_at1/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40270OsAffx.14215.1.S1_at11/114+23730035..23730310hypothetical protein
LOC_Os04g40279OsAffx.10250.3.S1_at4/114+23732589..23732974NA
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53658.1.S1_at--972--10451Chr04:23721077..23721101 (25 bp)
TTAGCAGTACGGTCCTCGCATGTTG
LOC_Os04g40250
Os.53658.1.S1_at--15--7732Chr07:9009754..9009778 (25 bp)
GGGTGGCAATTTTCTCAGCTAGCAA
NONE
Os.53658.1.S1_at--164--1131Chr04:23720856..23720880 (25 bp)
AGTGCAGCATGTTCTTTATTGATCC
LOC_Os04g40250
Os.53658.1.S1_at--334--10412Chr07:9009637..9009661 (25 bp)
TTATTGATCCTGTACCAACCTCATG
NONE
Os.53658.1.S1_at--1019--2592Chr12:26503398..26503418 (21 bp)
AACCTCATGAAATCGACCGGTCTGA
LOC_Os12g42710
Os.53658.1.S1_at--476--7671Chr04:23720353..23720377 (25 bp)
GGGATTTCTTTTCGTGCAGTAACAA
LOC_Os04g40250
Os.53658.1.S1_at--1006--192Chr09:3970539..3970564 (23 bp)
ATTTCTGTTGTACTTTTGTGCGCAC
NONE
Os.53658.1.S1_at--941--51Chr04:23720191..23720215 (25 bp)
ATTGAAGAGCTTCCCTATGCAGAGC
LOC_Os04g40250
Os.53658.1.S1_at--165--5891Chr04:23720148..23720172 (25 bp)
GAGCGATGGTTCTTTTGTTCTTTGA
NONE
Os.53658.1.S1_at--1158--6271Chr04:23720123..23720147 (25 bp)
GATGTATGTTGCCTTTGCTGTTGCA
NONE
Os.53658.1.S1_at--192--10391Chr04:23720091..23720115 (25 bp)
TTTTCTCTTCCAACCACAGTGATAA
NONE
Target Sequence 
TTAGCAGTACGGTCCTCGCATGTTGCAAGTGTTCAATGGGTGGCAATTTTCTCAGCTAGCAACAACAACAGTTGATGACT
GCCAATGCCAATGTTGGTGACTCAATTCTTAAGTTATTTCAAAATAATTTTAACAGTGCAGCATGTTCTTTATTGATCCT
GTACCAACCTCATGAAATCGACCGGTCTGAACATATGGATGATTTAGCCCACACAACAAATCAATGCGATTTGGAATTTA
ATTATTTGGGCATACGCGGATTGGGGATTTCTTTTCGTGCAGTAACAATATTTCTGTTGTACTTTTGTGCGCACATAGGG
GAGTGTGGAGTTGCTATCGTGACATTCTTCAAATCCAAGTTAGTATTATATAAGGATTTTACCTATTCTTCATATGTCAT
GCCTATAAATTTGTCAGGAAATTGTATTGAAGAGCTTCCCTATGCAGAGCTCATTGGTGCTGGAGTTTGAGCGATGGTTC
TTTTGTTCTTTGAGATGTATGTTGCCTTTGCTGTTGCAAGCTAAATTTTCTCTTCCAACCACAGTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis