Browse Element(s) Details


Os.53692.1.S1_at

Description gb:AK073959.1
DB_XREF= gi:32983982
TID=Os.53692.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071L22, full insert sequence.
FL= gb:AK073959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3235011/11WD-repeat protein 74, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32300Os.37083.2.S1_at1/117+19208938..19209264retrotransposon protein, putative, unclassified
LOC_Os07g32310NANA7+19209903..19215866retrotransposon protein, putative, unclassified
LOC_Os07g32320Os.28943.1.S1_x_at1/117+19216489..19219708retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.47130.4.A1_x_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.37083.2.S1_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32340Os.26536.1.S1_at11/117+19222234..19228786retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32350Os.53692.1.S1_at11/117+19229955..19234318WD-repeat protein 74, putative, expressed
LOC_Os07g32360OsAffx.28709.1.S1_at11/117+19236102..19236539hypothetical protein
LOC_Os07g32370OsAffx.16522.1.S1_at11/117+19238179..19239847hypothetical protein
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53692.1.S1_at--46--2111Chr07:19231419..19231443 (25 bp)
ACATCCAGAGCTACCTTTGATAGCA
LOC_Os07g32350
Os.53692.1.S1_at--949--3711Chr07:19231411..19231433 (23 bp)
CTACCTTTGATAGCATCTTGTGGAC
LOC_Os07g32350
Os.53692.1.S1_at--698--6491Chr07:19231245..19231425 (25 bp)
GATAGCATCTTGTGGACTGGACAGT
LOC_Os07g32350
Os.53692.1.S1_at--843--8111Chr07:19231232..19231256 (25 bp)
GGACTGGACAGTTACTTACGCATCT
LOC_Os07g32350
Os.53692.1.S1_at--1102--6751Chr07:19231222..19231246 (25 bp)
GTTACTTACGCATCTGGGACACAAA
LOC_Os07g32350
Os.53692.1.S1_at--526--4971Chr07:19231213..19231237 (25 bp)
GCATCTGGGACACAAATACAAGGCA
LOC_Os07g32350
Os.53692.1.S1_at--286--3091Chr07:19231199..19231223 (25 bp)
AATACAAGGCAGCTGCTCTCTGCGG
LOC_Os07g32350
Os.53692.1.S1_at--775--4811Chr07:19230718..19231209 (25 bp)
GCTCTCTGCGGTCTTCCTCAAGCAG
LOC_Os07g32350
Os.53692.1.S1_at--1104--6791Chr07:19230678..19230702 (25 bp)
GTTATTGATTCACATTTCTCCACTG
LOC_Os07g32350
Os.53692.1.S1_at--44--10791Chr07:19230675..19230698 (24 bp)
TTGATTCACATTTCTCCACTGAAGA
LOC_Os07g32350
Os.53692.1.S1_at--679--191Chr07:19230392..19230689 (25 bp)
ATTTCTCCACTGAAGAACTCGAGGA
LOC_Os07g32350
Target Sequence 
ACATCCAGAGCTACCTTTGATAGCATCTTGTGGACTGGACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGC
TCTCTGCGGTCTTCCTCAAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis