Browse Element(s) Details


Os.53712.1.S1_x_at

Description gb:AK099424.1
DB_XREF= gi:32984633
TID=Os.53712.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013008N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013008N09, full insert sequence.
FL= gb:AK099424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1182011/11expressed protein
LOC_Os05g023801/11hypothetical protein
LOC_Os02g271001/11hypothetical protein
LOC_Os01g021701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11780OsAffx.11013.2.S1_s_at11/111+6366221..6366868hypothetical protein
LOC_Os01g11790OsAffx.22107.4.S1_at11/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.2.S1_x_at10/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.1.S1_x_at6/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11800OsAffx.23206.1.S1_x_at11/111+6379683..6380489hypothetical protein
LOC_Os01g11800OsAffx.26758.1.S1_x_at2/111+6379683..6380489hypothetical protein
LOC_Os01g11810Os.47366.1.A1_x_at11/111+6384493..6388269expressed protein
LOC_Os01g11810Os.3875.1.S1_at10/111+6384493..6388269expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.53712.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.49834.1.S1_at1/111+6391072..6392469expressed protein
LOC_Os01g11830NANA1+6392952..6394096Papain family cysteine protease containing protein, expressed
LOC_Os01g11840Os.8360.1.S1_at1/111+6397692..6398868Papain family cysteine protease containing protein
LOC_Os01g11850OsAffx.25632.1.S1_at4/111+6399795..6407674hypothetical protein
LOC_Os01g11860Os.681.2.S1_x_at11/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_x_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.25487.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.32054.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53712.1.S1_x_at--652--4271Chr01:6391884..6391908 (25 bp)
CCTGTGTCCAGCAAGCGGCTGCGGT
LOC_Os01g11820
Os.53712.1.S1_x_at--63--9251Chr01:6391921..6391945 (25 bp)
TCCTTGCCAACATTGTGTTCGTCCT
LOC_Os01g11820
Os.53712.1.S1_x_at--260--7491Chr01:6391959..6391983 (25 bp)
GTGGGATGCTTCTCGGCCGGATATA
LOC_Os01g11820
Os.53712.1.S1_x_at--895--10531Chr01:6391968..6391992 (25 bp)
TTCTCGGCCGGATATACTACGATCA
LOC_Os01g11820
Os.53712.1.S1_x_at--812--9511Chr01:6392071..6392095 (25 bp)
TCTACTTCCAAATGGGCTCACCGGC
LOC_Os01g11820
Os.53712.1.S1_x_at--23--9171Chr01:6392177..6392201 (25 bp)
TGCCGCCGGCTCTGTCGAGAAGAGA
LOC_Os01g11820
Os.53712.1.S1_x_at--793--4073Chr11:590343..590367 (24 bp)
CGAGAATGATGATGTGGCGTCCTGA
NONE
Os.53712.1.S1_x_at--322--3471Chr01:6392327..6392351 (25 bp)
CAGGGTCAAAACTACCGAGGGATCT
LOC_Os01g11820
Os.53712.1.S1_x_at--819--2512Chr08:11504859..11505066 (25 bp)
AACTACCGAGGGATCTGAAGTGAAC
NONE
Os.53712.1.S1_x_at--71--76316Chr10:13173985..13174165 (25 bp)
GGGACAATTTTGTAACTCGACTATA
NONE
Os.53712.1.S1_x_at--961--3771Chr01:6392421..6392445 (25 bp)
CTCGACTATAAGTTGAGGGACCTTT
LOC_Os01g11820
Target Sequence 
CCTGTGTCCAGCAAGCGGCTGCGGTGGTGGGCGGTGGTCCTTGCCAACATTGTGTTCGTCCTCGGCGGGCAGAGCGTGGG
ATGCTTCTCGGCCGGATATACTACGATCAGGGGCGGCGACAGCTTGTGGCTGGCGACGGTGGTGCAGTCCTGCGGAGCGC
CTCTCACCGTCCTGCTGCTGCTGCTGCTCTACTTCCAAATGGGCTCACCGGCCCCTCCCTTGATCGAGCCCAGCGAGCGG
TGGTGGCGGCAGAGCTCGGCTGGGGCCGGGCTCGACGGCCGCCTCTCCCCATCTGCCGCCGGCTCTGTCGAGAAGAGAGG
AGAAGAGAAGAAATAAAAAGAAAAGAGAAAAAAAAGAAATAAGACGAGAATGATGATGTGGCGTCCTGACATGTGGGGCC
CACGTGGGTCCCACGCCAACTCAGCCGCCACATCAGACAAAACCAGGGTCAAAACTACCGAGGGATCTGAAGTGAACGGT
TTTGTAGATTGAAGGATGTCATATATCTGGTATTGTGGTTCGGGGACAATTTTGTAACTCGACTATAAGTTGAGGGACCT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53712.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis