Browse Element(s) Details


Os.53761.1.S1_at

Description gb:AK099786.1
DB_XREF= gi:32984995
TID=Os.53761.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096K20, full insert sequence.
FL= gb:AK099786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4156011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41530OsAffx.4205.2.A1_at10/1111+24405548..24406707expressed protein
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed
LOC_Os11g41570OsAffx.31432.1.S1_at11/1111+24435433..24438560F-box domain containing protein
LOC_Os11g41580NANA11+24440112..24441438transposon protein, putative, unclassified
LOC_Os11g41590OsAffx.19311.1.S1_at11/1111+24446932..24448320hypothetical protein
LOC_Os11g41600Os.11907.1.S1_at10/1111+24449427..24451354expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53761.1.S1_at--227--4871Chr11:24433187..24433211 (25 bp)
GCTATCCGTTTGGATCCTCCAAGAA
LOC_Os11g41560
Os.53761.1.S1_at--108--3671Chr11:24433240..24433264 (25 bp)
CTTATCAACATGACCTTAGGCCCTT
LOC_Os11g41560
Os.53761.1.S1_at--31--7071Chr11:24433275..24433299 (25 bp)
GTAAGCTCTCTCAGATACAATGGTA
LOC_Os11g41560
Os.53761.1.S1_at--399--4271Chr11:24433301..24433325 (25 bp)
CCTGACTACTGGTTCTTGGACTGTA
LOC_Os11g41560
Os.53761.1.S1_at--163--8971Chr11:24433394..24433418 (25 bp)
TGACAATGATGATTTCCTCGCGGTT
LOC_Os11g41560
Os.53761.1.S1_at--1142--7351Chr11:24433450..24433474 (25 bp)
GTGAACACTTTGACATTCTTGGATT
LOC_Os11g41560
Os.53761.1.S1_at--188--6651Chr11:24433491..24433515 (25 bp)
GTTGTTTTCTTGGATCAGTCATTCA
LOC_Os11g41560
Os.53761.1.S1_at--900--2451Chr11:24433517..24433541 (25 bp)
AACAATCGCCTTTCATTTCAATAGC
LOC_Os11g41560
Os.53761.1.S1_at--1103--6551Chr11:24433547..24433571 (25 bp)
GATTCAATACCTGGGTTACTCGCGC
LOC_Os11g41560
Os.53761.1.S1_at--485--4551Chr11:24433570..24433594 (25 bp)
GCCCAAAGTGCTACTACCGGAACTA
LOC_Os11g41560
Os.53761.1.S1_at--498--6791Chr11:24433656..24433680 (25 bp)
GTTATTGGGCAGAGCTCATCTTGAA
LOC_Os11g41560
Target Sequence 
GCTATCCGTTTGGATCCTCCAAGAATCAGCAGGACAGATGGGGTGGATCTTAACTTATCAACATGACCTTAGGCCCTTTG
CCAAAGAAGTAAGCTCTCTCAGATACAATGGTAACCTGACTACTGGTTCTTGGACTGTAGAAGAAAATAGTACTGGTATG
CATGGAAACAGAGATACTCTGTCTGCAGAGGATTTCGAGTGGGACTCTGACAATGATGATTTCCTCGCGGTTGAAGTTAG
AAACGAGGAATATGATGATGACTGTGAACACTTTGACATTCTTGGATTTCATCCTTACAAGGAAGTTGTTTTCTTGGATC
AGTCATTCAAAACAATCGCCTTTCATTTCAATAGCTCAAAGATTCAATACCTGGGTTACTCGCGCCCAAAGTGCTACTAC
CGGAACTACACAAATGGTATATATGAGTCGTTCGTGTACACTCCCTGCATGATTGGAGAGCTTCATGGAGTTATTGGGCA
GAGCTCATCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis