Browse Element(s) Details


Os.53808.1.S1_x_at

Description gb:AK100187.1
DB_XREF= gi:32985396
TID=Os.53808.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023033O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033O22, full insert sequence.
FL= gb:AK100187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3509011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35039Os.9639.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039OsAffx.12357.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039Os.57570.1.S1_at1/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35060OsAffx.24583.1.S1_at11/112+21033759..21036768RNA methylase family UPF0020 containing protein, putative, expressed
LOC_Os02g35070Os.17120.1.S1_at11/112+21037966..21044468SPRY domain containing protein, expressed
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein
LOC_Os02g35100Os.24275.1.S2_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35100Os.24275.1.S1_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35110Os.10211.1.S1_at11/112+21068099..21069316tubulin folding cofactor C, putative, expressed
LOC_Os02g35120OsAffx.21756.3.S1_x_at2/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.2.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.4.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35130Os.7291.1.S1_at11/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35130Os.48518.1.S1_at1/112+21076774..21082494AIG1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53808.1.S1_x_at--1154--7211Chr02:21055189..21055213 (25 bp)
GTCGAGAAGGACACCGCCGGCCAAA
LOC_Os02g35090
Os.53808.1.S1_x_at--1061--2071Chr02:21054746..21055185 (25 bp)
ACATCTACTCCGTCGAGCCGACGGT
LOC_Os02g35090
Os.53808.1.S1_x_at--773--9931Chr02:21054720..21054744 (25 bp)
TACGTGGCGGAGAGCGCCATCAGCT
LOC_Os02g35090
Os.53808.1.S1_x_at--243--9231Chr02:21054606..21054630 (25 bp)
TCCATCCTCATCCAGGTCGGCAAGA
LOC_Os02g35090
Os.53808.1.S1_x_at--1119--571Chr02:21054597..21054621 (25 bp)
ATCCAGGTCGGCAAGAACCAGCCGC
LOC_Os02g35090
Os.53808.1.S1_x_at--500--1331Chr02:21054409..21054433 (25 bp)
AGAGGACCAGCTCTCCTCCTGAACT
LOC_Os02g35090
Os.53808.1.S1_x_at--969--1271Chr02:21054353..21054377 (25 bp)
AGATCAGAAATGTCTGTGACTTCAG
LOC_Os02g35090
Os.53808.1.S1_x_at--432--7371Chr02:21054338..21054362 (25 bp)
GTGACTTCAGACATGATGCTTGTAT
LOC_Os02g35090
Os.53808.1.S1_x_at--985--631Chr02:21054323..21054347 (25 bp)
ATGCTTGTATACGTATCATCACAGT
LOC_Os02g35090
Os.53808.1.S1_x_at--792--311Chr02:21054315..21054339 (25 bp)
ATACGTATCATCACAGTTCACAAAG
LOC_Os02g35090
Os.53808.1.S1_x_at--332--7951Chr02:21054271..21054295 (25 bp)
GGATATGCACGTATACACTACATGG
LOC_Os02g35090
Target Sequence 
GTCGAGAAGGACACCGCCGGCCAAACCAACATCTACTCCGTCGAGCCGACGGTGTACGTGGCGGAGAGCGCCATCAGCTC
GGGGGCGGCGGGCGCGGCGGCGGACGGGTCGGAGAACACGGCGGCGATCGCCGGCGGCCTCGCCCTCGTCTTCGTCGCCG
GCGTGTCGTCCATCCTCATCCAGGTCGGCAAGAACCAGCCGCCGCCGCAGGCCACCGTCTACTCCGGCCCGCCGCTCAGC
TACTACGTCGCCAAGTTCCAGCCGTCCCTCGCCGCGGTCGCGCTCCAGCAGCAGCCCGCCGTCGACGCGCCCGCCACAGA
GGACGCCTCGTCGCCGGCGCCGGCGTCCCCCGCCGCCGCCGCCGCAGAGGACCAGCTCTCCTCCTGAACTGCTGCTGCTG
CAGATAGAGAAGAAGAAGAGAAGATCAGAAATGTCTGTGACTTCAGACATGATGCTTGTATACGTATCATCACAGTTCAC
AAAGATTCAAATGTACTGATGAAGGATATGCACGTATACACTACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53808.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis