Browse Element(s) Details


Os.53811.1.S1_at

Description gb:AK100216.1
DB_XREF= gi:32985425
TID=Os.53811.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045H21, full insert sequence.
FL= gb:AK100216.1 gb:AK103412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0779011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed
LOC_Os05g07750OsAffx.14584.3.S1_x_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07750OsAffx.14584.3.S1_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed
LOC_Os05g07780Os.20602.2.S1_x_at11/115+4169636..4171816hAT family dimerisation domain containing protein
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein
LOC_Os05g07799NANA5+4180901..4181962NA
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed
LOC_Os05g07820OsAffx.14585.1.S1_s_at11/115+4189805..4194694Leucine Rich Repeat family protein, expressed
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53811.1.S1_at--808--7051Chr05:4173709..4173733 (25 bp)
GTAACTGTAAGCAACCACCTGCAGT
LOC_Os05g07790
Os.53811.1.S1_at--751--1431Chr05:4173674..4173698 (25 bp)
AGAATCACCTCAGTTCTTTTCACGA
LOC_Os05g07790
Os.53811.1.S1_at--173--651Chr05:4173601..4173625 (25 bp)
ATGCATACTGTAGTCATTCCATCGA
LOC_Os05g07790
Os.53811.1.S1_at--345--5191Chr05:4173574..4173598 (25 bp)
GCAATGCGTGATCTGGTTACCCAAA
LOC_Os05g07790
Os.53811.1.S1_at--911--8171Chr05:4173525..4173549 (25 bp)
GGAACTGCGTATTTCACATGGATTT
LOC_Os05g07790
Os.53811.1.S1_at--1080--10411Chr05:4173502..4173526 (25 bp)
TTATACTCTCATAGCAGATCTGCCG
LOC_Os05g07790
Os.53811.1.S1_at--79--1291Chr05:4173487..4173511 (25 bp)
AGATCTGCCGATCAACATGCATGTT
LOC_Os05g07790
Os.53811.1.S1_at--953--4991Chr05:4173469..4173493 (25 bp)
GCATGTTTGGCATTCTGTTCCATCA
LOC_Os05g07790
Os.53811.1.S1_at--1136--2491Chr05:4173442..4173466 (25 bp)
AACATGGGACCCTAGTGCCGTGGCA
LOC_Os05g07790
Os.53811.1.S1_at--954--7271Chr05:4173428..4173452 (25 bp)
GTGCCGTGGCAATGGTTATCCCCTA
LOC_Os05g07790
Os.53811.1.S1_at--708--5831Chr05:4173396..4173420 (25 bp)
GACCTTTGGACTTTTGATGGCCTCA
LOC_Os05g07790
Target Sequence 
GTAACTGTAAGCAACCACCTGCAGTTGGATTGGCAAGAATCACCTCAGTTCTTTTCACGACAAATTCCTTTTTCAAATTT
ATAGAGAATTGGCATGTCTTATACTTGCATGCATACTGTAGTCATTCCATCGAAGGCAATGCGTGATCTGGTTACCCAAA
CATTAATCAAGCATGTTGAACTCAGGAACTGCGTATTTCACATGGATTTATACTCTCATAGCAGATCTGCCGATCAACAT
GCATGTTTGGCATTCTGTTCCATCAGAAACATGGGACCCTAGTGCCGTGGCAATGGTTATCCCCTACCCTTAGGACCTTT
GGACTTTTGATGGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis