Browse Element(s) Details


Os.53836.1.S1_at

Description gb:AK100336.1
DB_XREF= gi:32985545
TID=Os.53836.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081D10, full insert sequence.
FL= gb:AK100336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3826011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38210Os.6980.1.S1_at11/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38210OsAffx.8265.1.A1_at1/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38220NANA12+23449664..23449939hypothetical protein
LOC_Os12g38230Os.55662.1.S1_at11/1112+23451269..23452144expressed protein
LOC_Os12g38240NANA12+23456530..23457593transposon protein, putative, unclassified
LOC_Os12g38250OsAffx.7830.1.S1_at11/1112+23458352..23459049expressed protein
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53836.1.S1_at--454--1051Chr12:23465147..23465171 (25 bp)
AGGTGAGCTACAACCTGAGCCTGCA
LOC_Os12g38260
Os.53836.1.S1_at--1026--8911Chr12:23465162..23465186 (25 bp)
TGAGCCTGCAATGGAAGCCGGACCT
LOC_Os12g38260
Os.53836.1.S1_at--172--671Chr12:23465236..23465260 (25 bp)
ATGAACCTTGTGTATGACGCGGAGT
LOC_Os12g38260
Os.53836.1.S1_at--490--1831Chr12:23465252..23465276 (25 bp)
ACGCGGAGTGTCTTGCGCTGGACCT
LOC_Os12g38260
Os.53836.1.S1_at--469--7731Chr12:23465289..23465313 (25 bp)
GGTGGATGACCTTCTGGATGACATT
LOC_Os12g38260
Os.53836.1.S1_at--520--7411Chr12:23465326..23465350 (25 bp)
GTGTTGATTTCCATTGACGCGTAAT
LOC_Os12g38260
Os.53836.1.S1_at--201--6371Chr12:23465366..23465390 (25 bp)
GATCCTGAAGATTTTTTCCCTTATC
LOC_Os12g38260
Os.53836.1.S1_at--345--10651Chr12:23465381..23465405 (25 bp)
TTCCCTTATCAGATAGGTGGCTCAC
LOC_Os12g38260
Os.53836.1.S1_at--881--8311Chr12:23465399..23465423 (25 bp)
GGCTCACTGTTCTAGCACTGTGTTA
LOC_Os12g38260
Os.53836.1.S1_at--105--2291Chr12:23465426..23465450 (25 bp)
AAATGAGTGCACTTCCTGGGCAGAT
LOC_Os12g38260
Os.53836.1.S1_at--599--6431Chr12:23465677..23465701 (25 bp)
GATATGGACTCTTTAACTTTCCGGG
LOC_Os12g38260
Target Sequence 
AGGTGAGCTACAACCTGAGCCTGCAATGGAAGCCGGACCTGACAGTGGAGGACGTTGTGGCGCATGATGTCATGATGAAG
GACAGGTGGATGAACCTTGTGTATGACGCGGAGTGTCTTGCGCTGGACCTGGAGGATATGGTGGTGGATGACCTTCTGGA
TGACATTGTTCTTCAGATAGTGTTGATTTCCATTGACGCGTAATGATGAATGATACCATGATCCTGAAGATTTTTTCCCT
TATCAGATAGGTGGCTCACTGTTCTAGCACTGTGTTAATAAATGAGTGCACTTCCTGGGCAGATCATTATACCAGAAATG
CAGACATGACAAATGTAGTATAGTGTAGATATTAGCAGTGCATAGATATTGCTAGACATAGAAAAAGTAGAATAGACAGG
AAATAGCTTAGCAGATCACTGATGAGTGTAATATTTGACAGCAAATCTTTCAGGTATGCTTAATTTGTACTTGTACTATA
TACATTCAATTTGTAAAAAAAAACATAATAATATCTCTATAGTCAATATTGATATGGACTCTTTAACTTTCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis