Browse Element(s) Details


Os.53874.1.S1_at

Description gb:AK100547.1
DB_XREF= gi:32985756
TID=Os.53874.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102N13, full insert sequence.
FL= gb:AK100547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g247506/11expressed protein
LOC_Os11g267201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24700Os.8639.1.S1_at11/112+14327236..14328144auxin-induced protein TGSAUR12, putative, expressed
LOC_Os02g24710NANA2+14328976..14329413hypothetical protein
LOC_Os02g24720OsAffx.24410.1.S1_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.24410.1.S1_x_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720Os.28462.1.S1_s_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.2442.1.S1_x_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24730NANA2+14335798..14341916retrotransposon protein, putative, unclassified
LOC_Os02g24740Os.23391.1.A1_at11/112+14349693..14350300Auxin-induced protein 10A5, putative, expressed
LOC_Os02g24750OsAffx.24411.1.S1_at10/112+14351070..14356277expressed protein
LOC_Os02g24750Os.53874.1.S1_at6/112+14351070..14356277expressed protein
LOC_Os02g24750Os.7074.1.S1_at4/112+14351070..14356277expressed protein
LOC_Os02g24760Os.20602.2.S1_x_at9/112+14357062..14357741Transposase, putative
LOC_Os02g24770NANA2+14362871..14366083retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g24780OsAffx.29724.6.S1_x_at8/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29724.1.S1_x_at7/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29724.3.S1_x_at7/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29724.2.S1_x_at2/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29376.1.S1_x_at1/112+14368964..14373800hypothetical protein
LOC_Os02g24790NANA2+14377756..14383849retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53874.1.S1_at--748--6633Chr02:2521722..2521746 (25 bp)
GTTGTGCTCCACGATTATCAGTTCA
NONE
Os.53874.1.S1_at--269--7051Chr02:2521994..2522018 (25 bp)
GTAAACGGCAGTTTCTTTCTGTTCT
NONE
Os.53874.1.S1_at--674--8792Chr02:2522013..2522037 (25 bp)
TGTTCTTCCACCGTTTGTGCTGATG
NONE
Os.53874.1.S1_at--1051--651Chr02:2522035..2522059 (25 bp)
ATGAATGTTGTGCATTCCCTCCTTG
NONE
Os.53874.1.S1_at--657--9232Chr02:2522054..2522078 (25 bp)
TCCTTGTTTGAGCTCGGCCATGGAG
NONE
Os.53874.1.S1_at--666--6171Chr02:2522076..2522100 (25 bp)
GAGGAGTCACCGGTATCTCTGGGCT
NONE
Os.53874.1.S1_at--486--10152Chr02:2522089..2522113 (25 bp)
TATCTCTGGGCTGGCGGTGCTAGAA
NONE
Os.53874.1.S1_at--26--9091Chr02:2522106..2522130 (25 bp)
TGCTAGAACAGTACACACGGTCGTG
NONE
Os.53874.1.S1_at--121--3912Chr02:2522143..2522265 (25 bp)
CTGGACGGCCTTTTCAGGGATTTGT
NONE
Os.53874.1.S1_at--404--3512Chr02:2522437..2522461 (25 bp)
CATGGTGTGTACTTAACTGCTTATT
NONE
Os.53874.1.S1_at--99--831Chr02:2522465..2522489 (25 bp)
ATGGTCAGGTTTACTTTCCATTCGT
NONE
Target Sequence 
GTTGTGCTCCACGATTATCAGTTCAGAATGTCAGATAAGTGAAGGTTGGTTGGTTAGCTGGGATGTCGGTAGCGGTCGTT
GAAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATA
TCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCGTTTGTGCTGATGAATGTTGTGCAT
TCCCTCCTTGTTTGAGCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGT
GTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGA
TTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTT
CTTCAGCGATAGTCTTAATTAATAGCTCTTGTGGGCAGTCATTGACAGGCATGGTGTGTACTTAACTGCTTATTGAAATG
GTCAGGTTTACTTTCCATTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis