Browse Element(s) Details


Os.53887.2.S1_x_at

Description gb:AK106304.1
DB_XREF= gi:32991513
TID=Os.53887.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C08, full insert sequence.
FL= gb:AK106304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4948011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified
LOC_Os07g49460Os.14563.1.S2_at11/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49460Os.14563.1.S1_at10/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49470Os.53368.1.S1_at11/117+29629278..29631774Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g49480Os.53887.2.S1_x_at11/117+29631922..29636670expressed protein
LOC_Os07g49480Os.53887.1.S1_at10/117+29631922..29636670expressed protein
LOC_Os07g49490Os.25754.2.S1_x_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49490OsAffx.16443.1.S1_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49500NANA7+29642504..29648233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein
LOC_Os07g49520Os.13926.1.S1_at11/117+29655167..296607692-oxoglutarate dehydrogenase, E1 component family protein, expressed
LOC_Os07g49530Os.53311.1.S1_at10/117+29661669..29664616Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53887.2.S1_x_at--114--2651Chr07:29633051..29633075 (25 bp)
AACCATGTCTCTTTGCAGATTGCAG
LOC_Os07g49480
Os.53887.2.S1_x_at--1050--5411Chr07:29633014..29633038 (25 bp)
GAAGCCTTGCGTGCTAGCGCAGAGA
LOC_Os07g49480
Os.53887.2.S1_x_at--250--7871Chr07:29632977..29633001 (25 bp)
GGTTTACACCATACGAAGCAGCCAA
LOC_Os07g49480
Os.53887.2.S1_x_at--917--4771Chr07:29632835..29632859 (25 bp)
GCTGCGTGAGAGCTTTGATCTTTCA
LOC_Os07g49480
Os.53887.2.S1_x_at--65--6431Chr07:29632819..29632843 (25 bp)
GATCTTTCATGCAGGAGGTCATCTT
LOC_Os07g49480
Os.53887.2.S1_x_at--23--131Chr07:29632754..29632778 (25 bp)
ATTCAAACACTTCCCGACTAGAACA
LOC_Os07g49480
Os.53887.2.S1_x_at--898--2771Chr07:29632730..29632754 (25 bp)
AAGAGTGCCATTGCGGAACTTCCTA
LOC_Os07g49480
Os.53887.2.S1_x_at--688--8171Chr07:29632716..29632740 (25 bp)
GGAACTTCCTATTCGGCACAAAGCC
LOC_Os07g49480
Os.53887.2.S1_x_at--277--212Chr01:37027174..37027193 (20 bp)
ATTTGCCTGCATAAATCCTACGTTG
NONE
Os.53887.2.S1_x_at--397--9671Chr07:29632535..29632665 (25 bp)
TCAGCGATCTGTGAGTTGGCAGACA
LOC_Os07g49480
Os.53887.2.S1_x_at--1034--6952Chr01:16998951..16998973 (22 bp)
GTAGAATACATGTACTCCCTCTGTT
NONE
Target Sequence 
AACCATGTCTCTTTGCAGATTGCAGGAGGAGATAGCTGAAGCCTTGCGTGCTAGCGCAGAGACTGATGGTGGTAGGTTTA
CACCATACGAAGCAGCCAAGTTTCAAGGGGAGGTACTGAACATGCAACAGTCTAGTGGTAAGATCGAGAGGGAGTTACAG
TCAGCACTGAAGCGCATGAGAGAACTTGAAGGCAAGGTCAATGACGGCTTGCAGAAGCTGCGTGAGAGCTTTGATCTTTC
ATGCAGGAGGTCATCTTTGGTGGAGGAAGAAAGCAGCAGCACCAGCTACCACAGCCAATTCAAACACTTCCCGACTAGAA
CAAGAGTGCCATTGCGGAACTTCCTATTCGGCACAAAGCCGAAGAAGAAATCAATATTTGCCTGCATAAATCCTACGTTG
CAGAAACAGTTCAGCGATCTGTGAGTTGGCAGACACTGTAGAATACATGTACTCCCTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53887.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis