Browse Element(s) Details


Os.53913.1.S1_at

Description gb:AK100794.1
DB_XREF= gi:32986003
TID=Os.53913.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121E24, full insert sequence.
FL= gb:AK100794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4619011/11RNA pol II accessory factor, Cdc73 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46170NANA3+26057015..26063594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46180OsAffx.13377.1.S1_at11/113+26069175..26070086Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46240OsAffx.13379.1.S1_at11/113+26098221..26098454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53913.1.S1_at--885--3931Chr03:26071911..26071935 (25 bp)
CGGCAGGATCATGTAAGCGGTCTAT
LOC_Os03g46190
Os.53913.1.S1_at--211--6051Chr03:26071859..26071883 (25 bp)
GAGTTCTTTGGAGTTCTGTAATGTT
LOC_Os03g46190
Os.53913.1.S1_at--764--2971Chr03:26071828..26071852 (25 bp)
AATGGTTTCCTACTCCATGTTCTAG
LOC_Os03g46190
Os.53913.1.S1_at--573--3511Chr03:26071813..26071837 (25 bp)
CATGTTCTAGTACTGCTGCCTTCGT
LOC_Os03g46190
Os.53913.1.S1_at--182--4791Chr03:26071799..26071823 (25 bp)
GCTGCCTTCGTGTATCATGAATGGT
LOC_Os03g46190
Os.53913.1.S1_at--509--5291Chr03:26071781..26071805 (25 bp)
GAATGGTTTACTAATCCCTATGGAG
LOC_Os03g46190
Os.53913.1.S1_at--33--6431Chr03:26071727..26071751 (25 bp)
GATCTAATCTGAATTGCACTGTAGC
LOC_Os03g46190
Os.53913.1.S1_at--348--4871Chr03:26071704..26071728 (25 bp)
GCTAGTGATTAGTCAGCTCTGCATA
LOC_Os03g46190
Os.53913.1.S1_at--766--4811Chr03:26071689..26071713 (25 bp)
GCTCTGCATATAACTGATCCTCACA
LOC_Os03g46190
Os.53913.1.S1_at--312--3531Chr03:26071659..26071683 (25 bp)
CATGCATGATGTTTGTGACTGTCAA
LOC_Os03g46190
Os.53913.1.S1_at--540--8731Chr03:26071640..26071664 (25 bp)
TGTCAAGGCTATCATGCTAATTCTG
LOC_Os03g46190
Target Sequence 
CGGCAGGATCATGTAAGCGGTCTATCTTATTTTTATTTGAAAAGAAGATCCTGAGTTCTTTGGAGTTCTGTAATGTTGGA
CATAATGGTTTCCTACTCCATGTTCTAGTACTGCTGCCTTCGTGTATCATGAATGGTTTACTAATCCCTATGGAGTATGG
ATTGACCAATCATAGATAATTTGTGATCTAATCTGAATTGCACTGTAGCTAGTGATTAGTCAGCTCTGCATATAACTGAT
CCTCACAAAGAACATGCATGATGTTTGTGACTGTCAAGGCTATCATGCTAATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis