Browse Element(s) Details


Os.53935.1.S1_at

Description gb:AK100905.1
DB_XREF= gi:32986114
TID=Os.53935.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132C04, full insert sequence.
FL= gb:AK100905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5490011/11lipid-A-disaccharide synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53935.1.S1_at--537--7051Chr01:31896355..31896379 (25 bp)
GTAACGTCATCAGGTCTGGGCTTGC
LOC_Os01g54900
Os.53935.1.S1_at--620--8651Chr01:31896339..31896363 (25 bp)
TGGGCTTGCTTGATGGCTGCTCTAG
LOC_Os01g54900
Os.53935.1.S1_at--26--2351Chr01:31896289..31896313 (25 bp)
AAAGCATAGATTCCCACGTAGCCGG
LOC_Os01g54900
Os.53935.1.S1_at--760--9671Chr01:31896256..31896280 (25 bp)
TCACGGCTGAGCTCATCTAGGTGGT
LOC_Os01g54900
Os.53935.1.S1_at--644--5991Chr01:31896220..31896244 (25 bp)
GAGACGGCGAATCTTCCATGGAAAA
LOC_Os01g54900
Os.53935.1.S1_at--66--4951Chr01:31896153..31896177 (25 bp)
GCATTGCCAGTGTTCCACTTGGGAA
LOC_Os01g54900
Os.53935.1.S1_at--871--10171Chr01:31896112..31896136 (25 bp)
TATAACGATTTTACCTGCCAACTGC
LOC_Os01g54900
Os.53935.1.S1_at--284--7451Chr01:31896043..31896067 (25 bp)
GTGTAATCATCTGGTGCCACTAGCT
LOC_Os01g54900
Os.53935.1.S1_at--378--4411Chr01:31896028..31896052 (25 bp)
GCCACTAGCTATCCGTGAACTTCAG
LOC_Os01g54900
Os.53935.1.S1_at--1044--7791Chr01:31895904..31895928 (25 bp)
GGTCGCGGTGCATGGATTCGTTTCC
LOC_Os01g54900
Os.53935.1.S1_at--569--6831Chr01:31895885..31895909 (25 bp)
GTTTCCCTGGCATCTCGGTAAGAAA
LOC_Os01g54900
Target Sequence 
GTAACGTCATCAGGTCTGGGCTTGCTTGATGGCTGCTCTAGCCATAGAGGATCCTCGGTCAGTGAGAAAGCATAGATTCC
CACGTAGCCGGCGATCACGTCACGGCTGAGCTCATCTAGGTGGTGGCCCATGCANGAGACGGCGAATCTTCCATGGAAAA
TATTTCGAAAATTGTTGCTTCGGTTTTAATTACAAGTTGCCGGCATTGCCAGTGTTCCACTTGGGAATATCTAACNCTTT
TCTTATAACGATTTTACCTGCCAACTGCAGNATGGCATGGGGAAAAGTNTTGAGCCATCGTGTACTTAAATTGTGTAATC
ATCTGGTGCCACTAGCTATCCGTGAACTTCAGGAGTAAGTTGATCTAGAATGGTGACTGGTCAATGGAGGCCTTGTAATT
GTAATTTGTAAAACAATCTAATGATGTAACATCTCAAGGCATTGCCAGTGTGGTCGCGGTGCATGGATTCGTTTCCCTGG
CATCTCGGTAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis