Browse Element(s) Details


Os.53942.1.S1_at

Description gb:AK100957.1
DB_XREF= gi:32986166
TID=Os.53942.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140H04, full insert sequence.
FL= gb:AK100957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0107411/11RNase P subunit p30 family protein, expressed
LOC_Os12g010801/11CCT motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01040Os.51042.1.S1_at11/1111+13301..14796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g01050OsAffx.30757.1.S1_at11/1111+26139..27608Exo70 exocyst complex subunit family protein
LOC_Os11g01060OsAffx.30758.1.S1_at11/1111+28626..30038hypothetical protein
LOC_Os11g01074Os.15933.1.A1_s_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.2.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_x_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074OsAffx.31533.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01090NANA11+44371..50691retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01100OsAffx.30760.1.S1_at11/1111+51332..52266hypothetical protein
LOC_Os11g01109OsAffx.30761.2.S1_s_at11/1111+52703..54852hypothetical protein
LOC_Os11g01109OsAffx.30761.1.S1_at4/1111+52703..54852hypothetical protein
LOC_Os11g01118NANA11+56826..57134hypothetical protein
LOC_Os11g01130OsAffx.31534.1.S1_at11/1111+67344..67955Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0000213molecular_functiontRNA-intron endonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53942.1.S1_at--1050--8453Chr12:41284..41308 (25 bp)
TGGCCTGATCAATGTATCTACCTTC
NONE
Os.53942.1.S1_at--1110--6452Chr12:41290..41314 (25 bp)
GATCAATGTATCTACCTTCACGTAC
NONE
Os.53942.1.S1_at--1101--3192Chr12:41293..41317 (25 bp)
CAATGTATCTACCTTCACGTACGTA
NONE
Os.53942.1.S1_at--645--8752Chr12:41296..41320 (25 bp)
TGTATCTACCTTCACGTACGTACCT
NONE
Os.53942.1.S1_at--749--432Chr12:41299..41323 (25 bp)
ATCTACCTTCACGTACGTACCTGGA
NONE
Os.53942.1.S1_at--418--9892Chr12:41302..41326 (25 bp)
TACCTTCACGTACGTACCTGGACTA
NONE
Os.53942.1.S1_at--111--9892Chr12:41306..41330 (25 bp)
TTCACGTACGTACCTGGACTAACTA
NONE
Os.53942.1.S1_at--845--6972Chr12:41311..41335 (25 bp)
GTACGTACCTGGACTAACTACCACA
NONE
Os.53942.1.S1_at--603--6952Chr12:41315..41339 (25 bp)
GTACCTGGACTAACTACCACAATGT
NONE
Os.53942.1.S1_at--238--753Chr12:41336..41360 (25 bp)
ATGTATCATCATCAGGGCTGGAGCT
NONE
Os.53942.1.S1_at--809--6893Chr12:41338..41362 (25 bp)
GTATCATCATCAGGGCTGGAGCTCA
LOC_Os12g01080
Target Sequence 
TGGCCTGATCAATGTATCTACCTTCACGTACGTACCTGGACTAACTACCACAATGTATCATCATCAGGGCTGGAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis