Browse Element(s) Details


Os.53977.1.S1_at

Description gb:AK101115.1
DB_XREF= gi:32986324
TID=Os.53977.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025G14, full insert sequence.
FL= gb:AK101115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3565011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35660OsAffx.14163.1.S1_at11/114+21546243..21547257No apical meristem protein, expressed
LOC_Os04g35670NANA4+21551318..21552325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35680Os.50533.1.S1_at11/114+21558280..21560175U-box domain containing protein, expressed
LOC_Os04g35690Os.57071.1.S1_at11/114+21563535..21564977TPR Domain containing protein, expressed
LOC_Os04g35700Os.27038.1.S1_at11/114+21565180..21571197mitogen-activated kinase kinase kinase alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53977.1.S1_at--355--3631Chr04:21538513..21538537 (25 bp)
CTTCCTTTAAGCTGATAGTGTCCAT
LOC_Os04g35650
Os.53977.1.S1_at--622--9231Chr04:21538493..21538517 (25 bp)
TCCATGTTGACAGGACTCTGCTTAG
LOC_Os04g35650
Os.53977.1.S1_at--89--10131Chr04:21538443..21538467 (25 bp)
TATCAGGAGTTGAAGACCCCAAGCT
LOC_Os04g35650
Os.53977.1.S1_at--842--3791Chr04:21538420..21538444 (25 bp)
CTCCCTCCGTGCTTGAATTTGAACA
LOC_Os04g35650
Os.53977.1.S1_at--150--2451Chr04:21538386..21538410 (25 bp)
AAAATTCTTGTGTTCTCGTGGCCGA
LOC_Os04g35650
Os.53977.1.S1_at--1049--7531Chr04:21538369..21538393 (25 bp)
GTGGCCGAGAATTACCTACTGCTGA
LOC_Os04g35650
Os.53977.1.S1_at--1093--131Chr04:21538359..21538383 (25 bp)
ATTACCTACTGCTGACTTCCAGAAT
LOC_Os04g35650
Os.53977.1.S1_at--681--4871Chr04:21538323..21538347 (25 bp)
GCTTTCTGATTGTAAACTTATTCCA
LOC_Os04g35650
Os.53977.1.S1_at--567--71Chr04:21538304..21538328 (25 bp)
ATTCCATGAGGGAGCTATCAACAAG
LOC_Os04g35650
Os.53977.1.S1_at--1108--3271Chr04:21538279..21538303 (25 bp)
CAAATGGCAAGGTCTAGTGGAGCTT
LOC_Os04g35650
Os.53977.1.S1_at--584--10071Chr04:21538265..21538289 (25 bp)
TAGTGGAGCTTTGCTACTACTGCCT
LOC_Os04g35650
Target Sequence 
CTTCCTTTAAGCTGATAGTGTCCATGTTGACAGGACTCTGCTTAGATAAGCTGAAACAATCGTTGTGGGGTATCAGGAGT
TGAAGACCCCAAGCTCCCTCCGTGCTTGAATTTGAACACGATTTGGTAAAATTCTTGTGTTCTCGTGGCCGAGAATTACC
TACTGCTGACTTCCAGAATTTTGGGGTGTTGCTTTCTGATTGTAAACTTATTCCATGAGGGAGCTATCAACAAGCAAATG
GCAAGGTCTAGTGGAGCTTTGCTACTACTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis