Browse Element(s) Details


Os.54064.1.S1_at

Description gb:AK101639.1
DB_XREF= gi:32986848
TID=Os.54064.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055G23, full insert sequence.
FL= gb:AK101639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3741111/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37360OsAffx.13211.1.S1_at11/113+20661656..20664252hypothetical protein
LOC_Os03g37377Os.54774.1.S1_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.54774.1.S1_x_at2/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377Os.52447.1.S1_x_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37377OsAffx.13218.1.S1_at1/113+20665866..20671716retrotransposon, putative, centromere-specific
LOC_Os03g37394NANA3+20673690..20678484retrotransposon protein, putative, unclassified
LOC_Os03g37411Os.54064.1.S1_at11/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_at5/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.2.A1_at4/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_x_at3/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.5.S1_x_at2/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.2.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.53479.1.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37430OsAffx.28025.2.S1_at10/113+20709434..20714568hypothetical protein
LOC_Os03g37440NANA3+20715418..20716337hypothetical protein
LOC_Os03g37444OsAffx.17914.1.S1_x_at1/113+20717745..20718205NA
LOC_Os03g37450Os.39427.1.A1_at11/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_x_at7/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_at4/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.39427.1.A1_s_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.46592.1.S1_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37460NANA3+20725170..20725484hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54064.1.S1_at--1150--7731Chr03:20682233..20682257 (25 bp)
GGTGGTGTTTCTCATGTTCCGCGAC
LOC_Os03g37411
Os.54064.1.S1_at--508--31Chr03:20681903..20681927 (25 bp)
ATTGTGGCGTACATCAATGTCGGGT
LOC_Os03g37411
Os.54064.1.S1_at--227--2991Chr03:20681888..20681912 (25 bp)
AATGTCGGGTGCTACTATTTTGTGG
LOC_Os03g37411
Os.54064.1.S1_at--669--10171Chr03:20681873..20681897 (25 bp)
TATTTTGTGGGTATTCCTCTCGGTT
LOC_Os03g37411
Os.54064.1.S1_at--297--9431Chr03:20681854..20681878 (25 bp)
TCGGTTTTCTCCTCGGCTTCAAATT
LOC_Os03g37411
Os.54064.1.S1_at--998--8291Chr03:20681840..20681864 (25 bp)
GGCTTCAAATTCCATCTCGGAGCAA
LOC_Os03g37411
Os.54064.1.S1_at--941--7971Chr03:20681271..20681295 (25 bp)
GGATGCTCGGTGGTACCTGCATGCA
LOC_Os03g37411
Os.54064.1.S1_at--668--1751Chr03:20681257..20681281 (25 bp)
ACCTGCATGCAGACGTTGATATTGT
LOC_Os03g37411
Os.54064.1.S1_at--69--6531Chr03:20681240..20681264 (25 bp)
GATATTGTTCTGGATCACTTTCAGG
LOC_Os03g37411
Os.54064.1.S1_at--978--7951Chr03:20681229..20681253 (25 bp)
GGATCACTTTCAGGACAGACTGGAA
LOC_Os03g37411
Os.54064.1.S1_at--1083--7631Chr03:20680092..20680116 (25 bp)
GGGTAAAATGCTTATGCGCACTTAT
LOC_Os03g37411
Target Sequence 
GGTGGTGTTTCTCATGTTCCGCGACTACATCAGCTACATCTTCACGGAGGGGGAGACCGTTGCACGAGCCGTCTCCGACC
TCTGCCCCTTCCTCGCCGCCACTCTCATTCTCAACGGCATCCAGCCCGTCCTCTCTGGTGTGGCTGTCGGGTGTGGATGG
CAAAAGATTGTGGCGTACATCAATGTCGGGTGCTACTATTTTGTGGGTATTCCTCTCGGTTTTCTCCTCGGCTTCAAATT
CCATCTCGGAGCAAAGGGGATATGGACTGGGATGCTCGGTGGTACCTGCATGCAGACGTTGATATTGTTCTGGATCACTT
TCAGGACAGACTGGAACAAAGAGGTGGAAGAAGCCAAGAAAAGACTGAATCAATGGGAGGACAAGAAGCAACCGCTTCTT
GCAGGCACGGTTGACTACTGATTCGCATGACAAATGTTGGGTAAAATGCTTATGCGCACTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis