Browse Element(s) Details


Os.54077.1.S1_at

Description gb:AK105399.1
DB_XREF= gi:32990608
TID=Os.54077.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C07, full insert sequence.
FL= gb:AK105399.1 gb:AK101734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0271011/11expressed protein
LOC_Os11g027406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein
LOC_Os12g02700Os.50992.1.S1_at11/1112+943441..944546Harpin-induced protein 1 containing protein, expressed
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_s_at11/1112+970331..974926expressed protein
LOC_Os12g02750Os.53770.1.S1_at10/1112+970331..974926expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_at8/1112+970331..974926expressed protein
LOC_Os12g02760Os.54328.1.S1_at11/1112+974104..976096expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54077.1.S1_at--630--7872Chr12:946695..946719 (25 bp)
GGTTTCCACCTTTTTGAAGATCAGA
LOC_Os12g02710
Os.54077.1.S1_at--184--2232Chr12:946635..946659 (25 bp)
ACAATGGTACTGTCCCAGTTCAAGA
LOC_Os12g02710
Os.54077.1.S1_at--423--7672Chr12:946521..946545 (25 bp)
GGGTTCGTCATCAATCACATGGGAT
LOC_Os12g02710
Os.54077.1.S1_at--540--7972Chr12:946500..946524 (25 bp)
GGATCTGCATTTGATAGCTCGGTCT
LOC_Os12g02710
Os.54077.1.S1_at--1106--1572Chr12:946485..946509 (25 bp)
AGCTCGGTCTCGATTTCATCAAGGA
LOC_Os12g02710
Os.54077.1.S1_at--961--5772Chr12:946374..946398 (25 bp)
GACGAGAGGTCTGCTACAGTTTGTA
LOC_Os12g02710
Os.54077.1.S1_at--431--4852Chr12:946346..946370 (25 bp)
GCTACTCCTTCAGTTATTACCTTTG
LOC_Os12g02710
Os.54077.1.S1_at--743--10452Chr12:946330..946354 (25 bp)
TTACCTTTGGTTTTGCCTTGTGAAT
LOC_Os12g02710
Os.54077.1.S1_at--175--8972Chr12:946295..946319 (25 bp)
TGAAATGGTTCTTGTTTTATCGGTT
LOC_Os12g02710
Os.54077.1.S1_at--854--7032Chr12:946262..946286 (25 bp)
GTACACTTGATAGTTTAGCTTGCTG
LOC_Os12g02710
Os.54077.1.S1_at--752--10452Chr12:946248..946272 (25 bp)
TTAGCTTGCTGTAGTCTGAGTGAAT
LOC_Os12g02710
Target Sequence 
GGTTTCCACCTTTTTGAAGATCAGAATGTTGCAAGTAGGGGAAAGCAGAGCAGCCNCATAACAATGGTACTGTCCCAGTT
CAAGAAGATCAGTGACTGGTTGGATGGAGTAGGCAAGATTGCAGAAGAGGCTACAACTAAGGATAAGGTTGAGCAGTTGA
AGTGCAAGATTTANGGGTTCGTCATCAATCACATGGGATCTGCATTTGATAGCTCGGTCTCGATTTCATCAAGGAATTGA
GGAATGCTTAAAGTAAGCCTTTAAGTTTCTTCTCTTNTATTTTTGTTCATTGGGGATGGGATCAAAGCTACATAATTCTA
TGACGAGAGGTCTGCTACAGTTTGTAGAAGCTACTCCTTCAGTTATTACCTTTGGTTTTGCCTTGTGAATAAGTTGTTTG
TGAAATGGTTCTTGTTTTATCGGTTACAATTATGTACACTTGATAGTTTAGCTTGCTGTAGTCTGAGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis