Browse Element(s) Details


Os.54091.1.S1_at

Description gb:AK101841.1
DB_XREF= gi:32987050
TID=Os.54091.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069G13, full insert sequence.
FL= gb:AK101841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5833011/11pentatricopeptide, putative, expressed
LOC_Os02g288301/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein
LOC_Os02g58390Os.6800.1.S1_x_at11/112+35699844..35704819Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006493biological_processprotein amino acid O-linked glycosylation
GO:0009736biological_processcytokinin mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
GO:0016262molecular_functionprotein N-acetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54091.1.S1_at--686--4251Chr02:35677221..35677245 (25 bp)
CCGGTCGCACGAGGCGTGGATCATA
LOC_Os02g58330
Os.54091.1.S1_at--745--3991Chr02:35677235..35677259 (25 bp)
CGTGGATCATAGACGTCGCCGAGCA
LOC_Os02g58330
Os.54091.1.S1_at--507--4911Chr02:35677305..35677329 (25 bp)
GCTTCCTCCGTCAATTTTTAGATTC
LOC_Os02g58330
Os.54091.1.S1_at--904--6571Chr02:35677325..35677349 (25 bp)
GATTCGACTGAGACGCTGAGCTCAT
LOC_Os02g58330
Os.54091.1.S1_at--21--3551Chr02:35677347..35677371 (25 bp)
CATCCGTCCATCCATGAGAGTTGTA
LOC_Os02g58330
Os.54091.1.S1_at--655--8731Chr02:35677368..35677392 (25 bp)
TGTACGTATAACTCTTTTTTCACTA
LOC_Os02g58330
Os.54091.1.S1_at--584--9811Chr02:35677409..35677433 (25 bp)
TAACTCCTCCGATCCATTTATTCAT
LOC_Os02g58330
Os.54091.1.S1_at--295--572Chr02:35677420..35677444 (25 bp)
ATCCATTTATTCATCGAGGCACAAA
LOC_Os02g58330
Os.54091.1.S1_at--389--10171Chr02:35677495..35677519 (25 bp)
TATACGTACAGCTCTTGTGGATGGA
LOC_Os02g58330
Os.54091.1.S1_at--1151--1151Chr02:35677523..35677547 (25 bp)
AGTACGATTCAGTGACTCTTCCGGT
LOC_Os02g58330
Os.54091.1.S1_at--9--3651Chr02:35677540..35677564 (25 bp)
CTTCCGGTGGGATATGTGCCTCATA
LOC_Os02g58330
Target Sequence 
CCGGTCGCACGAGGCGTGGATCATAGACGTCGCCGAGCAGCTGGAGCGGATGCTCGCCCACCACTGACTCCCGTCCGTCT
CTCAGCTTCCTCCGTCAATTTTTAGATTCGACTGAGACGCTGAGCTCATCCGTCCATCCATGAGAGTTGTACGTATAACT
CTTTTTTCACTATGACCAAGGAGAACACTAACTCCTCCGATCCATTTATTCATCGAGGCACAAACAAAATAAGTTCAACT
CTTGTGGAAAAACTAAGAAACATTATACAAACATTATACGTACAGCTCTTGTGGATGGAGGGAGTACGATTCAGTGACTC
TTCCGGTGGGATATGTGCCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis