Browse Element(s) Details


Os.54100.1.S1_at

Description gb:AK101925.1
DB_XREF= gi:32987134
TID=Os.54100.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071P08, full insert sequence.
FL= gb:AK101925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g028209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02756Os.6004.1.S1_a_at10/113+1045101..10540181,3-beta-glucan synthase component bgs3, putative, expressed
LOC_Os03g02762Os.6004.2.S2_at11/113+1054495..1057604expressed protein
LOC_Os03g02762Os.6004.2.S1_at11/113+1054495..1057604expressed protein
LOC_Os03g02770Os.6004.3.S1_at11/113+1056223..1057599expressed protein
LOC_Os03g02780NANA3+1059144..1059692Histone H4, putative, expressed
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02850Os.26571.1.S1_at10/113+1098132..1102122tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g02860Os.20163.1.S1_at11/113+1103313..1105401copper chaperone, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54100.1.S1_at--227--10871Chr03:1080511..1080535 (25 bp)
TTGGTTCGATGGAGCTATCTCCCAG
LOC_Os03g02820
Os.54100.1.S1_at--28--4211Chr03:1080536..1080560 (25 bp)
CCCCAGTTGGTTCTTGCTGATCTAA
LOC_Os03g02820
Os.54100.1.S1_at--751--7791Chr03:1080732..1080756 (25 bp)
GGTCACTGAAGTTGTCCCCGAAATG
LOC_Os03g02820
Os.54100.1.S1_at--888--1191Chr03:1080741..1080765 (25 bp)
AGTTGTCCCCGAAATGTGTAGTAGA
LOC_Os03g02820
Os.54100.1.S1_at--1160--6931Chr03:1080758..1080782 (25 bp)
GTAGTAGAAGCATATCAACACCCAT
LOC_Os03g02820
Os.54100.1.S1_at--559--9171Chr03:1080797..1080821 (25 bp)
TGCCCTGCCAGTGATGACCTTAGAT
LOC_Os03g02820
Os.54100.1.S1_at--829--6171Chr03:1080835..1080859 (25 bp)
GAGGACCTTACAGCTACTGTACCCA
LOC_Os03g02820
Os.54100.1.S1_at--1151--8491Chr03:1080868..1080892 (25 bp)
TGGCAATTAACCACTGAGACCATTA
LOC_Os03g02820
Os.54100.1.S1_at--939--5991NONE
GAGACCATTACAGGTTGCCGATGAA
NONE
Os.54100.1.S1_at--620--3471NONE
CAGGTTGCCGATGAAGTGATTTGAA
NONE
Os.54100.1.S1_at--1028--6891Chr03:1080998..1081022 (25 bp)
GTATCTATCTCATCATTTGACAATG
LOC_Os03g02820
Target Sequence 
TTGGTTCGATGGAGCTATCTCCCAGCCCCAGTTGGTTCTTGCTGATCTAATAGAAATTTTCTTTCCAACGGGGAATTACA
CAACAATTTACTTCAGGAATCTAATGAAGGATGAAGGGGTCACTGAAGTTGTCCCCGAAATGTGTAGTAGAAGCATATCA
ACACCCATGGAGCCAACAATCTTGCCCTGCCAGTGATGACCTTAGATGAATATGAAGACAGAGGACCTTACAGCTACTGT
ACCCACAAAACTATGGCAATTAACCACTGAGACCATTACAGGTTGCCGATGAAGTGATTTGAAGTTTTAAACAAAGCAGA
CTAGATTGCATATTTGAGAAAGAATCATGGTGACAAAGGACAATGATGTCTAAGGAATACTATGTATCTATCTCATCATT
TGACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis