Browse Element(s) Details


Os.54114.1.S1_at

Description gb:AK102028.1
DB_XREF= gi:32987237
TID=Os.54114.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080N15, full insert sequence.
FL= gb:AK102028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4335011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43350Os.54114.1.S1_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43350OsAffx.4074.1.S1_s_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43360Os.52541.1.S1_at10/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43360Os.27742.1.S1_at1/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43370NANA4+25427025..25427581Pectinesterase precursor, putative
LOC_Os04g43380NANA4+25431037..25433551transposon protein, putative, unclassified
LOC_Os04g43390Os.35154.1.S1_x_at6/114+25439253..25447635Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54114.1.S1_at--1068--2811Chr04:25419307..25419331 (25 bp)
AAGTAATTCAGAGAGCCCAAAAGGC
LOC_Os04g43350
Os.54114.1.S1_at--859--2411Chr04:25419395..25419419 (25 bp)
AAAAACATTTGTGGCGCCTGCACCT
LOC_Os04g43350
Os.54114.1.S1_at--1050--9311Chr04:25419446..25419470 (25 bp)
TCCCACACAGGAAGAATAGCTATAG
LOC_Os04g43350
Os.54114.1.S1_at--299--6791Chr04:25419484..25419508 (25 bp)
GTTAGTGCTGCATGAAGATGCTTTT
LOC_Os04g43350
Os.54114.1.S1_at--420--5351Chr04:25419497..25419521 (25 bp)
GAAGATGCTTTTTGTAATCCAAGTA
LOC_Os04g43350
Os.54114.1.S1_at--116--7071Chr04:25419519..25419543 (25 bp)
GTAAGAGATTCTCCGGTGGCATGTA
LOC_Os04g43350
Os.54114.1.S1_at--1061--9491Chr04:25419528..25419552 (25 bp)
TCTCCGGTGGCATGTAACCCTGAAA
LOC_Os04g43350
Os.54114.1.S1_at--1078--731Chr04:25419539..25419563 (25 bp)
ATGTAACCCTGAAATGCCCTTTTCT
LOC_Os04g43350
Os.54114.1.S1_at--43--4271Chr04:25419546..25419570 (25 bp)
CCTGAAATGCCCTTTTCTTCGTTAG
LOC_Os04g43350
Os.54114.1.S1_at--500--9571Chr04:25419561..25419585 (25 bp)
TCTTCGTTAGTGAATATCCGGCATT
LOC_Os04g43350
Os.54114.1.S1_at--547--6251Chr04:25419601..25419625 (25 bp)
GATGGTTTAATTTTCACATAATGAG
LOC_Os04g43350
Target Sequence 
AAGTAATTCAGAGAGCCCAAAAGGCAAAGGAGAGAGCTGCTATGGAGGTCGTTGACGAGAAGAGCCCGAAGACTTTAAGG
GAACCTTCAAAAACATTTGTGGCGCCTGCACCTGCGACATCGACACCTCCTCCCCCTACTCCCACACAGGAAGAATAGCT
ATAGGTGGTGATGAAGAGTTAGTGCTGCATGAAGATGCTTTTTGTAATCCAAGTAAGAGATTCTCCGGTGGCATGTAACC
CTGAAATGCCCTTTTCTTCGTTAGTGAATATCCGGCATTTCAATTAAAAGAATGGATGGTTTAATTTTCACATAATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis