Browse Element(s) Details


Os.54136.1.S1_at

Description gb:AK106543.1
DB_XREF= gi:32991752
TID=Os.54136.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E12, full insert sequence.
FL= gb:AK102102.1 gb:AK106543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3433010/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34290OsAffx.32015.1.S1_at11/1112+20750484..20753888F-box domain containing protein
LOC_Os12g34300Os.47885.1.A1_at11/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_x_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34310OsAffx.19963.1.S1_at11/1112+20762595..20765232F-box domain containing protein
LOC_Os12g34320Os.52252.1.S1_at11/1112+20769394..20772085D-mannose binding lectin family protein, expressed
LOC_Os12g34330Os.54136.1.S1_at10/1112+20772833..20778265PHD-finger family protein, expressed
LOC_Os12g34340Os.16910.1.S1_at10/1112+20780843..20782892pentatricopeptide, putative, expressed
LOC_Os12g34350Os.11418.1.S1_at11/1112+20782970..20787310expressed protein
LOC_Os12g34360NANA12+20795523..20798205expressed protein
LOC_Os12g34370Os.17717.1.S1_at10/1112+20799457..20804469Adaptor complexes medium subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54136.1.S1_at--1009--1031Chr12:20773805..20773829 (25 bp)
AGGTCCAGCTAGCTTCTGATGGCAA
LOC_Os12g34330
Os.54136.1.S1_at--415--8251Chr12:20773340..20773364 (25 bp)
GGCACTTTGTGCCTTCAGTTAGATA
LOC_Os12g34330
Os.54136.1.S1_at--694--4671Chr12:20773284..20773308 (25 bp)
GCGGGCAATCCGCTTGATAGCACAA
LOC_Os12g34330
Os.54136.1.S1_at--381--2671Chr12:20773244..20773268 (25 bp)
AAGCGATGAACCCATTTTGCGCCTG
LOC_Os12g34330
Os.54136.1.S1_at--462--7851Chr12:20773180..20773204 (25 bp)
GGTAGTAAGCAGACCTCTCCAGGCT
LOC_Os12g34330
Os.54136.1.S1_at--737--911Chr12:20773160..20773184 (25 bp)
AGGCTCCAGCATTTGGATCGTCGCA
LOC_Os12g34330
Os.54136.1.S1_at--328--511Chr12:20773144..20773168 (25 bp)
ATCGTCGCAGTCTCTGATTCATGGG
LOC_Os12g34330
Os.54136.1.S1_at--875--8011Chr12:20773113..20773137 (25 bp)
GGAGGTCTGAAGGTCTGCCGTTCTT
LOC_Os12g34330
Os.54136.1.S1_at--75--9231Chr12:20772990..20773014 (25 bp)
TCCTGCTGCATGAAGCGCATTGGCT
LOC_Os12g34330
Os.54136.1.S1_at--407--8491Chr12:20772970..20772994 (25 bp)
TGGCTTCATTTTGACTTCTGGTAGT
LOC_Os12g34330
Os.54136.1.S1_at--503--1671Chr12:20772833..20772857 (25 bp)
ACCAGTTTACCCAGAATTCCCTGTG
NONE
Target Sequence 
AGGTCCAGCTAGCTTCTGATGGCAAATGGCATCAGGGGGTAGTCTCGAATGTAATCAATGGCACTTTGTGCCTTCAGTTA
GATAATGGTAGGTCTGAGAACATAGAGCTGGGAAAGCGGGCAATCCGCTTGATAGCACAAAGGTCAAAGNGCGGAAAGCG
ATGAACCCATTTTGCGCCTGCCTCCCTGTTCTTGCTCTCAGTCAACTTCCTGCCACCAGGGTAGTAAGCAGACCTCTCCA
GGCTCCAGCATTTGGATCGTCGCAGTCTCTGATTCATGGGAGATTGGGAGGTCTGAAGGTCTGCCGTTCTTGCTGNCTTA
AGCTGACTGGATGAGACGTAGAAATGCAACATCATCCGTTGCGCGGTGTCTCACTAGNCTAGCATGTAACAGACTANGTT
TTTTTTTTTGTCCTGCTGCATGAAGCGCATTGGCTTCATTTTGACTTCTGGTAGTGTAGGAACAAACAACTGGGAAGGCT
TTTTAGGGGCCACCCTGGATGTAGAAGAAATGCCTGATGATGGCCATGTACATGTAGCTGTAGCTGCTGAATGAGTTCTT
TTTTTTAACCAGTTTACCCAGAATTCCCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis