Browse Element(s) Details


Os.54235.1.S1_at

Description gb:AK102679.1
DB_XREF= gi:32987888
TID=Os.54235.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102J01, full insert sequence.
FL= gb:AK102679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0840011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08350Os.8122.1.S1_at11/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08350OsAffx.4275.1.S1_at10/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08360Os.53192.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360OsAffx.4276.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360Os.47666.1.S1_at1/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08380NANA5+4553233..4553811hypothetical protein
LOC_Os05g08390OsAffx.26787.1.S1_at11/115+4557116..4557638expressed protein
LOC_Os05g08390OsAffx.26787.1.S1_s_at11/115+4557116..4557638expressed protein
LOC_Os05g08400Os.54235.1.S1_at11/115+4559350..4562057Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g08410Os.49237.1.S1_at11/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08410OsAffx.14231.1.S1_at1/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08420Os.53275.1.S1_at11/115+4571250..4572060expressed protein
LOC_Os05g08430OsAffx.14301.1.S1_at7/115+4578998..4586348Boron transporter-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54235.1.S1_at--440--2771Chr05:4559914..4559938 (25 bp)
AAGAGAAGCCGTTGCCTTGAACCCA
LOC_Os05g08400
Os.54235.1.S1_at--282--811Chr05:4559833..4559857 (25 bp)
ATGGGAGAGTGTCCTCAACCTGCTA
LOC_Os05g08400
Os.54235.1.S1_at--1092--2611Chr05:4559817..4559841 (25 bp)
AACCTGCTAACCATGCTACTTTCAG
LOC_Os05g08400
Os.54235.1.S1_at--513--731Chr05:4559757..4559781 (25 bp)
ATGTTCTTTCTGCTAAATCTTCTGA
LOC_Os05g08400
Os.54235.1.S1_at--509--4511Chr05:4559708..4559732 (25 bp)
GCCGAAGACCCTTGCTCAGATAAAA
LOC_Os05g08400
Os.54235.1.S1_at--1084--2511Chr05:4559665..4559689 (25 bp)
AACTCAAGTTTTAGCCACTCCACTG
LOC_Os05g08400
Os.54235.1.S1_at--703--5091Chr05:4559637..4559661 (25 bp)
GCACGCCTAATGTGAGATCCTTCTC
LOC_Os05g08400
Os.54235.1.S1_at--605--2271Chr05:4559593..4559617 (25 bp)
AAATCTCTGACCGAGCTTCTCATGA
LOC_Os05g08400
Os.54235.1.S1_at--1057--8211Chr05:4559548..4559572 (25 bp)
GGCAAGTGACCATATCCTAGCAAGT
LOC_Os05g08400
Os.54235.1.S1_at--423--6051Chr05:4559499..4559523 (25 bp)
GAGATTTCTGCTTTACTTGGTTAGG
LOC_Os05g08400
Os.54235.1.S1_at--530--2631Chr05:4559370..4559394 (25 bp)
AACCTGCCAGTGAATGTGCGGATGA
LOC_Os05g08400
Target Sequence 
AAGAGAAGCCGTTGCCTTGAACCCAAGAATAGTACTCAACAGATTGAATCAATGCCAACTCGTCAAAGGAAAGATTATTT
GATGGGAGAGTGTCCTCAACCTGCTAACCATGCTACTTTCAGGGGACGGAGGAAGAAAAATAGAGGAAAGCAACAGCATG
TTCTTTCTGCTAAATCTTCTGAACATCCTACTGCAGATTTTACTGGGCCGAAGACCCTTGCTCAGATAAAAGAAGAGAAA
TGTAAATCCAACTCAAGTTTTAGCCACTCCACTGCTTGCACGCCTAATGTGAGATCCTTCTCAGATGATTTTGAGGGGCC
CAAATCTCTGACCGAGCTTCTCATGACTAAGAGTAGGAGTTCTGTTGGCAAGTGACCATATCCTAGCAAGTGTTTATGTA
AAAGTGCAGCTCAGTGAGATTTCTGCTTTACTTGGTTAGGATGATGCCAACAGTTTTTTTTTTTTTTTTTTGAGGATGAA
AGCAATTCAGTCAAAAGGTCACAGAAGGTCTAGTGACAACTTTCTTTGAACAAATTCTTATGAGTTAACCTGCCAGTGAA
TGTGCGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis