Browse Element(s) Details


Os.54337.1.S1_at

Description gb:AK103478.1
DB_XREF= gi:32988687
TID=Os.54337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130E19, full insert sequence.
FL= gb:AK103478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2928411/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein
LOC_Os09g29284Os.54337.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29284OsAffx.6437.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29300OsAffx.6438.1.S1_at11/119+17784709..17785710expressed protein
LOC_Os09g29310OsAffx.6439.1.S1_x_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29310OsAffx.6439.1.S1_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29320Os.47130.4.A1_x_at1/119+17797812..17798138retrotransposon protein, putative, unclassified
LOC_Os09g29330NANA9+17798761..17804713retrotransposon protein, putative, unclassified
LOC_Os09g29340Os.28943.1.S1_x_at2/119+17805337..17807577retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54337.1.S1_at--696--8471Chr09:17782809..17782833 (25 bp)
TGGCGCTGGCCTTCCATGACAAGAT
LOC_Os09g29284
Os.54337.1.S1_at--560--5611Chr09:17782826..17782850 (25 bp)
GACAAGATAGCGCTCGTCTTCTCGT
LOC_Os09g29284
Os.54337.1.S1_at--406--3651Chr09:17782843..17782867 (25 bp)
CTTCTCGTCGAGCAATGCGGTGATC
LOC_Os09g29284
Os.54337.1.S1_at--198--7531Chr09:17782874..17782898 (25 bp)
GTGGACAACATCTCCTTTCTGCTAG
LOC_Os09g29284
Os.54337.1.S1_at--638--4691Chr09:17783044..17783068 (25 bp)
GCGGCAGTGGCCTATGTAAACATCG
LOC_Os09g29284
Os.54337.1.S1_at--95--611Chr09:17783070..17783094 (25 bp)
ATGCTACTACTTCATCGGAGTTCCT
LOC_Os09g29284
Os.54337.1.S1_at--869--491Chr09:17783083..17783107 (25 bp)
ATCGGAGTTCCTATCGGTGTTCTGC
LOC_Os09g29284
Os.54337.1.S1_at--987--10831Chr09:17783249..17783273 (25 bp)
TTGGGCTGGAATGATCGCTGGCACT
LOC_Os09g29284
Os.54337.1.S1_at--586--3151Chr09:17783288..17783312 (25 bp)
AATTCTGGCGCACATGACCATTCAG
LOC_Os09g29284
Os.54337.1.S1_at--927--3171Chr09:17783535..17783559 (25 bp)
AATTGGGCTTGCTTGCTTGAGTTGC
LOC_Os09g29284
Os.54337.1.S1_at--1084--6611Chr09:17783595..17783619 (25 bp)
GTTGGTTACTCTACTTGCTTGACGC
LOC_Os09g29284
Target Sequence 
TGGCGCTGGCCTTCCATGACAAGATAGCGCTCGTCTTCTCGTCGAGCAATGCGGTGATCGACGCCGTGGACAACATCTCC
TTTCTGCTAGCCGTCACCATCCTCCTCAACGGCGTCCAACCTGTTCTTTCAGGGGTTGCTATTGGTTCAGGGTGGCAAGC
GGCAGTGGCCTATGTAAACATCGGATGCTACTACTTCATCGGAGTTCCTATCGGTGTTCTGCTTGGTTGGAGTTTCAACC
TTGGAGTTTTTGGAATTTGGGCTGGAATGATCGCTGGCACTGCAATCCAGACTATAATTCTGGCGCACATGACCATTCAG
TGTGATTGGAACAAAGAGGTTTTGCAAGCAAGTGAACGCGTCCAAAGATGGGGGAACCCAAAATGAACAGGAGCAAGTAT
ATTATGTGTTCGTACTAGCAGTATTGTGGATTGTTCACTGTATCAACAGGTTTTCCATGTTGGAGAATTGGGCTTGCTTG
CTTGAGTTGCGGCTTGTAATTTGTAGAACTTTAGTTTAGAATTTGGTTGGTTACTCTACTTGCTTGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis