Browse Element(s) Details


Os.54371.1.S1_x_at

Description gb:AK103721.1
DB_XREF= gi:32988930
TID=Os.54371.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138B08, full insert sequence.
FL= gb:AK103721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0348011/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os05g063001/11Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os04g525201/11hypothetical protein
LOC_Os08g441601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed
LOC_Os12g03450Os.49338.1.S1_at11/1112+1345249..1347123pentatricopeptide, putative, expressed
LOC_Os12g03460Os.23141.1.S1_x_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03460Os.23141.1.S1_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03470Os.8403.1.S1_a_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03470Os.8403.1.S1_s_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein
LOC_Os12g03510OsAffx.7472.1.S1_at11/1112+1392045..1392655pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g03520NANA12+1394327..1395592retrotransposon protein, putative, unclassified
LOC_Os12g03530Os.51413.1.S1_at11/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03530OsAffx.7470.1.S1_x_at1/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0005777cellular_componentperoxisome
GO:0003824molecular_functioncatalytic activity
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008691molecular_function3-hydroxybutyryl-CoA dehydrogenase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54371.1.S1_x_at--772--1211Chr12:1373976..1374000 (25 bp)
AGTTGCCAGCGAGTTGCCGAATGCA
LOC_Os12g03480
Os.54371.1.S1_x_at--255--5151Chr12:1374012..1374036 (25 bp)
GCAAGTCTTACATTTTCCTTACTCA
LOC_Os12g03480
Os.54371.1.S1_x_at--872--3111Chr12:1374036..1374060 (25 bp)
AATTTGTTCGTTTGATCTTGCTCTG
LOC_Os12g03480
Os.54371.1.S1_x_at--755--431Chr12:1374050..1374074 (25 bp)
ATCTTGCTCTGGTTTAGCCGTTTAA
LOC_Os12g03480
Os.54371.1.S1_x_at--65--2511Chr12:1374096..1374120 (25 bp)
AACATGTTGGGACGCTGTTTCTGTC
LOC_Os12g03480
Os.54371.1.S1_x_at--1069--6831Chr12:1374112..1374136 (25 bp)
GTTTCTGTCCTTAATGACATCCCAG
LOC_Os12g03480
Os.54371.1.S1_x_at--531--71Chr12:1374163..1374187 (25 bp)
ATTCCACTGTATCAGAGCCCATTAG
LOC_Os12g03480
Os.54371.1.S1_x_at--1031--7151Chr12:1374373..1374397 (25 bp)
GTCTCCTTTTTGTTTGATAGCCATG
LOC_Os12g03480
Os.54371.1.S1_x_at--920--9511Chr12:1374434..1374458 (25 bp)
TCTCTCTTTTGTTTTCTTGCGGTAA
LOC_Os12g03480
Os.54371.1.S1_x_at--440--3011Chr12:1374457..1374481 (25 bp)
AATGCAGCTCTGTTAATTTCTCTAT
LOC_Os12g03480
Os.54371.1.S1_x_at--663--60711Chr12:1374527..1374551 (25 bp)
GAGTAAATTTCACTTTGGACCTGTT
LOC_Os12g03480
Target Sequence 
AGTTGCCAGCGAGTTGCCGAATGCAGCAGAACAGATGCAAGTCTTACATTTTCCTTACTCAATTTGTTCGTTTGATCTTG
CTCTGGTTTAGCCGTTTAATTAGCACAAGTTTATCAGGCTAACATGTTGGGACGCTGTTTCTGTCCTTAATGACATCCCA
GGATTTCATAGTGATCAAAAGCTAATTATTCCACTGTATCAGAGCCCATTAGGCCAAGGATGGTTTTAATTAAAGCTTAG
TTTGAACAACTCGCTTTATTTATAATATATCCCTTTATTGCTTCTAAGAAATCATCGAGTTGTTTGTTTGGATATTAGTA
ATGATATGGGAATTATTAAGTTGACCAGATAAAAATGTAGAATGCATCAAAAAGGAACTTGGTATCAATGAGATCACGTC
TCCTTTTTGTTTGATAGCCATGGATATGATGTTTCTATAATATGGGGATGGTGATGAGTCTCTCTTTTGTTTTCTTGCGG
TAATGCAGCTCTGTTAATTTCTCTATTACGGTTTGGCAAGATGGCCGGTGTCTCCGGATGTGATTTTTTTTGAGTAAATT
TCACTTTGGACCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54371.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis