Browse Element(s) Details


Os.54419.1.A1_x_at

Description gb:AK105128.1
DB_XREF= gi:32990337
TID=Os.54419.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-E07, full insert sequence.
FL= gb:AK105128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3573011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35680Os.22699.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35680Os.49408.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.49803.1.S1_at11/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.54931.1.S2_at1/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein
LOC_Os07g35730Os.54419.1.A1_x_at11/117+21393519..21395010Protein kinase domain containing protein, expressed
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54419.1.A1_x_at--43--8131Chr07:21394046..21394070 (25 bp)
GGACTAGCGATAAAGCCCTCGAGTT
LOC_Os07g35730
Os.54419.1.A1_x_at--623--5611Chr07:21393987..21394011 (25 bp)
GACAAGGTGCTCAAGTGCATCCAAA
LOC_Os07g35730
Os.54419.1.A1_x_at--603--4371Chr07:21393967..21393991 (25 bp)
CCAAATTGGGCTGCTCTGTGTTCAG
LOC_Os07g35730
Os.54419.1.A1_x_at--554--1671Chr07:21393944..21393968 (25 bp)
AGCCGAAACCTGCTGATAGGCCATT
LOC_Os07g35730
Os.54419.1.A1_x_at--863--10091Chr07:21393928..21393952 (25 bp)
TAGGCCATTGATGTCTGCTGTTAAT
LOC_Os07g35730
Os.54419.1.A1_x_at--164--9631Chr07:21393902..21393926 (25 bp)
TCATGCTTACTGGTACAATCCGTCT
LOC_Os07g35730
Os.54419.1.A1_x_at--228--1391Chr07:21393864..21393888 (25 bp)
AGACCTGCCTTTTGGTTTCAGGAGA
LOC_Os07g35730
Os.54419.1.A1_x_at--731--551Chr07:21393707..21393731 (25 bp)
ATCCGCTTCTTCTTTCATACAGTTA
LOC_Os07g35730
Os.54419.1.A1_x_at--555--2571Chr07:21393669..21393693 (25 bp)
AACGGACTCTTATTAATCTGGCTAT
LOC_Os07g35730
Os.54419.1.A1_x_at--910--431Chr07:21393646..21393670 (25 bp)
ATCTAGGTGTTGTGTTTTCGGCTCA
LOC_Os07g35730
Os.54419.1.A1_x_at--176--10151Chr07:21393585..21393609 (25 bp)
TATCCTGCTGTCATCCTGTTTAAAT
LOC_Os07g35730
Target Sequence 
GGACTAGCGATAAAGCCCTCGAGTTGATCGATCCATCATTGGGAAATCACTATCCAGTTGACAAGGTGCTCAAGTGCATC
CAAATTGGGCTGCTCTGTGTTCAGCCGAAACCTGCTGATAGGCCATTGATGTCTGCTGTTAATGTCATGCTTACTGGTAC
AATCCGTCTCCCTTCCTTGTCCAGACCTGCCTTTTGGTTTCAGGAGATTGGTGCTAGCTCAGATGTAAATTCAGAGCAGA
ACCTGCTTGACCCACACAACTCAACGAAAATGTATCAAAGTGAAGCACCGATCACAGAGCTTGAGCCNAGATAAATCTTG
TAAGATGAGTTGAAAGAATATCCGCTTCTTCTTTCATACAGTTACCGATATTTGTACAACGGACTCTTATTAATCTGGCT
ATCTAGGTGTTGTGTTTTCGGCTCAACAAAGTCAAGTGGAAATTATTAGATGTTAATAATGTATCCTGCTGTCATCCTGT
TTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54419.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis