Browse Element(s) Details


Os.54506.1.S1_at

Description gb:AK105481.1
DB_XREF= gi:32990690
TID=Os.54506.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B02, full insert sequence.
FL= gb:AK105481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3927011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39230Os.53503.1.S1_at11/113+21739478..21745800OTU-like cysteine protease family protein, expressed
LOC_Os03g39240OsAffx.7903.2.S1_x_at3/113+21747490..21748332hypothetical protein
LOC_Os03g39250OsAffx.22947.1.S1_x_at3/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.2.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250Os.52609.1.S1_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.5.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.3.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39270OsAffx.13248.1.S1_at11/113+21770766..21772793hypothetical protein
LOC_Os03g39270Os.54506.1.S1_at11/113+21770766..21772793hypothetical protein
LOC_Os03g39284OsAffx.7903.3.S1_x_at11/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39284OsAffx.7903.3.S1_at10/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39284OsAffx.7903.2.S1_x_at5/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39300NANA3+21792335..21792607hypothetical protein
LOC_Os03g39310Os.31929.3.S1_x_at1/113+21797392..21798352hypothetical protein
LOC_Os03g39310Os.31929.2.S1_x_at1/113+21797392..21798352hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54506.1.S1_at--567--452Chr08:5921993..5922017 (25 bp)
ATCTACACATATGGTCGCCGCCGGT
NONE
Os.54506.1.S1_at--1050--9351Chr03:21771933..21771957 (25 bp)
TCGACAAGATGTCTGGACCCGACGC
LOC_Os03g39270
Os.54506.1.S1_at--167--5812Chr08:5922104..5922128 (25 bp)
GACGCCGCCAATTTAAGCCGCTGGT
NONE
Os.54506.1.S1_at--464--4972Chr08:5922132..5922156 (25 bp)
GCATCTACTAGAAGCCGCGACGTCG
NONE
Os.54506.1.S1_at--869--2811Chr03:21771830..21771854 (25 bp)
AAGTTTCACCGTGCCGGAGCAGACT
LOC_Os03g39270
Os.54506.1.S1_at--680--10111Chr03:21771802..21771826 (25 bp)
TATGTCGAAGTCATCGTGACGCCGC
LOC_Os03g39270
Os.54506.1.S1_at--752--3831Chr03:21771774..21771798 (25 bp)
CTGCTGGAGCACGTCGAAGATCGCC
LOC_Os03g39270
Os.54506.1.S1_at--9--7211Chr03:21771742..21771766 (25 bp)
GTCGTCGTGAAGTTATTCCGTCGGA
LOC_Os03g39270
Os.54506.1.S1_at--326--4131Chr03:21771672..21771696 (25 bp)
CCCCGCTTTTATGCCGGAGGTCAAG
LOC_Os03g39270
Os.54506.1.S1_at--117--2711Chr03:21771650..21771674 (25 bp)
AAGCATCACGTACGTAGGGCGTCGA
LOC_Os03g39270
Os.54506.1.S1_at--864--6931Chr03:21771637..21771661 (25 bp)
GTAGGGCGTCGAAACCAGCAGATGA
LOC_Os03g39270
Target Sequence 
ATCTACACATATGGTCGCCGCCGGTGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGC
GCCCATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCATCTACTAGAAGCCGCGAC
GTCGCCAAGGTGCCAGACGTCCTCGCTTTGCTGCAAGTTTCACCGTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTG
ACGCCGCGCCCTGCTGGAGCACGTCGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGAT
CGCCGGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCATCACGTACGTAGGGCGTCGAA
ACCAGCAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis