Browse Element(s) Details


Os.54545.1.S1_at

Description gb:AK105572.1
DB_XREF= gi:32990781
TID=Os.54545.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-D03, full insert sequence.
FL= gb:AK105572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4106011/11Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g410801/11hydrolase, alpha/beta fold family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41014OsAffx.21870.3.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.1.S1_s_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.21870.2.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.2.S1_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.30361.1.S1_at1/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41030NANA7+24541477..24543148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41050OsAffx.28851.1.S1_s_at11/117+24553475..24555029NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41060Os.54545.1.S1_at11/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060OsAffx.28164.2.S1_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060Os.46481.2.S1_x_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41070Os.12775.1.S1_at9/117+24565848..24568623NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41080OsAffx.16668.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.25481.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.3237.1.S1_at4/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.24649.2.S1_x_at2/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.54545.1.S1_at1/117+24573467..24582564hydrolase, alpha/beta fold family protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0016787molecular_functionhydrolase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54545.1.S1_at--2--171Chr07:24558335..24558359 (25 bp)
ATTATTCTTCATCCAAGACGCTCAC
LOC_Os07g41060
Os.54545.1.S1_at--882--5791Chr07:24558319..24558343 (25 bp)
GACGCTCACAGAGAAGCTGCTGCTA
LOC_Os07g41060
Os.54545.1.S1_at--214--3751Chr07:24558141..24558165 (25 bp)
CTCAAGTTCTTGCAGGCCCTGATAG
LOC_Os07g41060
Os.54545.1.S1_at--290--8831Chr07:24558122..24558146 (25 bp)
TGATAGGTTCGGTGCCACTGGCACA
LOC_Os07g41060
Os.54545.1.S1_at--527--1951Chr07:24558106..24558130 (25 bp)
ACTGGCACACATCGAGGACATCTGC
LOC_Os07g41060
Os.54545.1.S1_at--845--511Chr07:24558096..24558120 (25 bp)
ATCGAGGACATCTGCGAGGCGCATA
LOC_Os07g41060
Os.54545.1.S1_at--926--891Chr07:24558080..24558104 (25 bp)
AGGCGCATATCTTCTGCGCGGAGCA
LOC_Os07g41060
Os.54545.1.S1_at--374--7692Chr07:24558021..24558045 (25 bp)
GGGTACCCCAATATGCAGGATTACG
LOC_Os07g41060
Os.54545.1.S1_at--1057--991Chr07:24558005..24558029 (25 bp)
AGGATTACGTCGATCACTTCGTCAC
LOC_Os07g41060
Os.54545.1.S1_at--1130--2031Chr07:24557990..24558014 (25 bp)
ACTTCGTCACCAAATACCCAGAGAT
LOC_Os07g41060
Os.54545.1.S1_at--189--6091Chr07:24557949..24557973 (25 bp)
GAGTACGTGTCTTTGACCAGTGATT
LOC_Os07g41060
Target Sequence 
ATTATTCTTCATCCAAGACGCTCACAGAGAAGCTGCTGCTAAGGTACAACGAGTCCGAGAGCAGGGCGTTCGAGGTGGTC
ACCCTGGCGTGCGCGCTCGTCGGCGGCGACGCCGACACCACCCAGCTCTACCACTCGCTCAGCGTGCCGGTGATCGTGTC
GCCGCTCACCGGCGACGAGTCATGCCACAACACCCTCAAGTTCTTGCAGGCCCTGATAGGTTCGGTGCCACTGGCACACA
TCGAGGACATCTGCGAGGCGCATATCTTCTGCGCGGAGCAGCCGTCCATCGCCGGCCGCTTCCTCTGCGCCGTTGGGTAC
CCCAATATGCAGGATTACGTCGATCACTTCGTCACCAAATACCCAGAGATCACGATAAAACTCAAAGAGTACGTGTCTTT
GACCAGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis