Browse Element(s) Details


Os.54549.1.S1_at

Description gb:AK105577.1
DB_XREF= gi:32990786
TID=Os.54549.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-D12, full insert sequence.
FL= gb:AK105577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3659011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g36550OsAffx.6043.1.S1_at9/118+22939321..22941710hypothetical protein
LOC_Os08g36560OsAffx.6044.1.S1_at11/118+22943250..22944601emp24/gp25L/p24 family protein
LOC_Os08g36570Os.56199.1.S1_at9/118+22945023..22946523expressed protein
LOC_Os08g36580Os.51364.1.A1_at11/118+22947474..22948192expressed protein
LOC_Os08g36580OsAffx.24604.1.S1_at1/118+22947474..22948192expressed protein
LOC_Os08g36590Os.54549.1.S1_at11/118+22952678..22954761expressed protein
LOC_Os08g36600OsAffx.29562.1.S1_at11/118+22959336..22959707hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_s_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.13557.1.S1_x_at1/118+22961207..22961824hypothetical protein
LOC_Os08g36620OsAffx.22848.3.S1_x_at3/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_at2/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_x_at1/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54549.1.S1_at--682--3971Chr08:22954352..22954376 (25 bp)
CGGGTTGCGGCAATCAAGGCAGTTC
LOC_Os08g36590
Os.54549.1.S1_at--542--1471Chr08:22954382..22954406 (25 bp)
AGAATCGACGGCAAATTCTGCCACA
LOC_Os08g36590
Os.54549.1.S1_at--552--2211Chr08:22954488..22954512 (25 bp)
ACAAGCCGCTTGCACCGTGTCGGAG
LOC_Os08g36590
Os.54549.1.S1_at--705--211Chr08:22954526..22954550 (25 bp)
ATTTGAGTATGAACGGCAGCCACCA
LOC_Os08g36590
Os.54549.1.S1_at--679--9171Chr08:22954562..22954586 (25 bp)
TGCCGCTTGTTTCCACTGAATGATG
LOC_Os08g36590
Os.54549.1.S1_at--607--1971Chr08:22954576..22954600 (25 bp)
ACTGAATGATGGTCACGCACTCACG
LOC_Os08g36590
Os.54549.1.S1_at--289--1851Chr08:22954590..22954614 (25 bp)
ACGCACTCACGCTGTAAAGCTGTAG
LOC_Os08g36590
Os.54549.1.S1_at--934--291Chr08:22954615..22954639 (25 bp)
ATAGCTCCGTTTATATCCATGTTGG
LOC_Os08g36590
Os.54549.1.S1_at--894--7911Chr08:22954642..22954666 (25 bp)
GGTTGATCTTTCAGCTCGATGTGTA
LOC_Os08g36590
Os.54549.1.S1_at--757--5391Chr08:22954673..22954697 (25 bp)
GAAGCTTTGAGCTGATCTTTCAATG
LOC_Os08g36590
Os.54549.1.S1_at--11--8771Chr08:22954722..22954746 (25 bp)
TGTATGTATGTGTGCGCCATCTTCC
LOC_Os08g36590
Target Sequence 
CGGGTTGCGGCAATCAAGGCAGTTCAGAACAGAATCGACGGCAAATTCTGCCACACAGAAGTGTGAGATGTACAATAGCG
TAGCGAAAGAGAGATGCAATGGCTGATCGATCGCCGAGGTTCGCGACCGGGGCGGCACAAGCCGCTTGCACCGTGTCGGA
GAGGTCAGTAATTCATTTGAGTATGAACGGCAGCCACCAAAGGGCTGAGCTGCCGCTTGTTTCCACTGAATGATGGTCAC
GCACTCACGCTGTAAAGCTGTAGATAGCTCCGTTTATATCCATGTTGGGGGGTTGATCTTTCAGCTCGATGTGTATCAAT
GGAAGCTTTGAGCTGATCTTTCAATGGAGGTGAGTAATGTGCATTGTACATGTATGTATGTGTGCGCCATCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis