Browse Element(s) Details


Os.54579.1.S1_at

Description gb:AK105945.1
DB_XREF= gi:32991154
TID=Os.54579.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C04, full insert sequence.
FL= gb:AK105945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2366011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g019701/11THO complex subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23600OsAffx.5415.1.S1_at11/117+13340955..13341623Root cap family protein
LOC_Os07g23610NANA7+13345750..13347138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23620Os.46306.1.S1_x_at6/117+13347999..13348847transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_x_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23640Os.10497.1.S1_s_at11/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_s_at8/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_x_at3/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23649NANA7+13357371..13357521NA
LOC_Os07g23660Os.10497.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_x_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.51813.1.S1_at1/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23670OsAffx.5416.1.S1_at11/117+13368122..13368470hypothetical protein
LOC_Os07g23670OsAffx.5416.1.S1_x_at10/117+13368122..13368470hypothetical protein
LOC_Os07g23680NANA7+13370115..13370972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23690OsAffx.16383.1.S1_at11/117+13371611..13372025late embryogenesis abundant protein, putative
LOC_Os07g23700Os.54774.1.S1_x_at3/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23700Os.54774.1.S1_at2/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23710Os.9017.1.S1_x_at3/117+13381137..13382436Cytochrome P450 family protein
LOC_Os07g23720Os.51151.1.S1_at11/117+13382752..13384349K+ channel tetramerisation domain containing protein, expressed
LOC_Os07g23730Os.52889.1.S1_at11/117+13387132..13390394Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54579.1.S1_at--478--1691Chr07:13365462..13365486 (25 bp)
AGCCAGAGCCGTCTCAACCAAAGCT
LOC_Os07g23660
Os.54579.1.S1_at--415--1371Chr07:13365466..13365490 (25 bp)
AGAGCCGTCTCAACCAAAGCTGCCA
LOC_Os07g23660
Os.54579.1.S1_at--522--2351Chr07:13365481..13365505 (25 bp)
AAAGCTGCCACCACTTTCACCAGCA
LOC_Os07g23660
Os.54579.1.S1_at--127--10071Chr07:13365591..13365615 (25 bp)
TAGTGACTATTTGTGTGTTTTTCGT
LOC_Os07g23660
Os.54579.1.S1_at--257--7371Chr07:13365593..13365617 (25 bp)
GTGACTATTTGTGTGTTTTTCGTGT
LOC_Os07g23660
Os.54579.1.S1_at--819--5692Chr07:13365595..13365619 (25 bp)
GACTATTTGTGTGTTTTTCGTGTGT
LOC_Os07g23660
Os.54579.1.S1_at--665--3691Chr07:13365597..13365621 (25 bp)
CTATTTGTGTGTTTTTCGTGTGTTG
LOC_Os07g23660
Os.54579.1.S1_at--1141--10831Chr07:13365601..13365625 (25 bp)
TTGTGTGTTTTTCGTGTGTTGTTCA
LOC_Os07g23660
Os.54579.1.S1_at--883--10111Chr07:13365759..13365783 (25 bp)
TATGTGCGTACATACCATCAATAAA
LOC_Os07g23660
Os.54579.1.S1_at--607--7291Chr07:13365762..13365786 (25 bp)
GTGCGTACATACCATCAATAAAAAG
LOC_Os07g23660
Os.54579.1.S1_at--849--7011Chr07:13365766..13365790 (25 bp)
GTACATACCATCAATAAAAAGAGCA
LOC_Os07g23660
Target Sequence 
AGCCAGAGCCGTCTCAACCAAAGCTGCCACCACTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTG
GTTGTTTGCTACGTATGATCCCGCATACTTTTGGTATGTACTATTGCTCTAGTGACTATTTGTGTGTTTTTCGTGTGTTG
TTCACTAGTGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCATATGAGCAGGCGTGCTTCTTATAATAAAG
CATACATACATACATACATACATACATACATACATATATATATACACGTGTGTTATGTATGTGCGTACATACCATCAATA
AAAAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis