Browse Element(s) Details


Os.54580.1.S1_at

Description gb:AK105952.1
DB_XREF= gi:32991161
TID=Os.54580.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D02, full insert sequence.
FL= gb:AK105952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2794011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27880OsAffx.6421.1.S1_x_at11/119+16952726..16953814hypothetical protein
LOC_Os09g27890Os.50922.1.S1_at11/119+16957543..16961139LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54580.1.S1_at--922--9891Chr09:16977386..16977410 (25 bp)
TACTACGTCGCGTTCACCGGCGTCA
LOC_Os09g27940
Os.54580.1.S1_at--385--8611Chr09:16977537..16977561 (25 bp)
TGGTGCGCGCCTTCCGGTCGCAGCT
LOC_Os09g27940
Os.54580.1.S1_at--329--4511Chr09:16977664..16977688 (25 bp)
GCCGAGGATGGTGTTCCACTTCCAG
LOC_Os09g27940
Os.54580.1.S1_at--1032--7991Chr09:16977669..16977693 (25 bp)
GGATGGTGTTCCACTTCCAGGGCGC
LOC_Os09g27940
Os.54580.1.S1_at--730--2531Chr09:16977716..16977740 (25 bp)
AACTACGTCCTGGAGGATCACCGGA
LOC_Os09g27940
Os.54580.1.S1_at--790--4091Chr09:16977786..16977810 (25 bp)
CGACGATCGGCAACTTCGTGCAGCA
LOC_Os09g27940
Os.54580.1.S1_at--397--1771Chr09:16977831..16977855 (25 bp)
ACCTGGAGCGGGAGACGTTGTCGTT
LOC_Os09g27940
Os.54580.1.S1_at--219--6711Chr09:16977853..16977877 (25 bp)
GTTCGCCCCGGTGGAGTGCTGAGAG
LOC_Os09g27940
Os.54580.1.S1_at--933--9111Chr09:16977869..16977893 (25 bp)
TGCTGAGAGGGCACCACGTGTCAAC
LOC_Os09g27940
Os.54580.1.S1_at--113--7591Chr09:16977877..16977901 (25 bp)
GGGCACCACGTGTCAACTGAAAATC
LOC_Os09g27940
Os.54580.1.S1_at--251--7451Chr09:16977886..16977910 (25 bp)
GTGTCAACTGAAAATCACTGTAGTT
LOC_Os09g27940
Target Sequence 
TACTACGTCGCGTTCACCGGCGTCACGGTCGGCGCGAGGCGGCTGCGGATCCCGGCGTCGGCGTTCGCGCTGCGCCCCGA
CGGCTCCGGCGGGGTGATCATCGACTCCGGCACGGCGCTCACGCTGTTCCCGGTGGCGGTGCTCGCCGAGGTGGTGCGCG
CCTTCCGGTCGCAGCTGAGGCTGCCGTTCGCCAACGGGAGCAGCCCCGACGACGGCGTGTGCTTCGCGGCGCCGGCCGTG
GCGGCGGGCGGCGGGAGGATGGCGCGGCAGGTGGCGGTGCCGAGGATGGTGTTCCACTTCCAGGGCGCCGACCTCGACCT
GCCGCGGGAGAACTACGTCCTGGAGGATCACCGGAGGGGGCACCTGTGCGTCCTCCTCGGCGACTCCGGCGACGACGGCG
CGACGATCGGCAACTTCGTGCAGCAGGACATGCGCGTGGTGTACGACCTGGAGCGGGAGACGTTGTCGTTCGCCCCGGTG
GAGTGCTGAGAGGGCACCACGTGTCAACTGAAAATCACTGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis