Browse Element(s) Details


Os.54619.1.S1_at

Description gb:AK106261.1
DB_XREF= gi:32991470
TID=Os.54619.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F07, full insert sequence.
FL= gb:AK106261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g030501/11Oxidoreductase NAD-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54619.1.S1_at--1129--3311Chr01:1164624..1164648 (25 bp)
CACTTGTTGCTGACGGTGTGCCAAA
LOC_Os01g03050
Os.54619.1.S1_at--830--10471Chr01:1164659..1164683 (25 bp)
TTAACAAACTTCTGACTGCCCCTAG
NONE
Os.54619.1.S1_at--276--9671Chr01:1164702..1164726 (25 bp)
TCAGCCTTCTAGATGTTGTATCCTT
NONE
Os.54619.1.S1_at--617--10291Chr01:1164820..1164844 (25 bp)
TTTCCAATTTTCCTGCACGATGCAA
NONE
Os.54619.1.S1_at--36--3531Chr01:1164845..1164869 (25 bp)
CATGCTGCGCTGTAATCTGGATTTT
NONE
Os.54619.1.S1_at--558--8571Chr01:1164862..1164886 (25 bp)
TGGATTTTGCCAGCCTGATGTATCA
NONE
Os.54619.1.S1_at--1109--3311Chr01:1164894..1164918 (25 bp)
CACTTGGTGGGCATTTTCGCATTTG
NONE
Os.54619.1.S1_at--41--4031Chr01:1164911..1164935 (25 bp)
CGCATTTGAACCGAAAGGCCCTAGT
NONE
Os.54619.1.S1_at--1039--2931Chr01:1164925..1164949 (25 bp)
AAGGCCCTAGTTCATACAGTTTTGT
NONE
Os.54619.1.S1_at--833--2131Chr01:1164940..1164964 (25 bp)
ACAGTTTTGTACCTCCTGAAACAAT
NONE
Os.54619.1.S1_at--354--9751Chr01:1165116..1165140 (25 bp)
TAATTTGTGTATTATTTCCCCGCAA
NONE
Target Sequence 
CACTTGTTGCTGACGGTGTGCCAAAAGATAGAATCTTAACAAACTTCTGACTGCCCCTAGCCCACTAGAACACAATTATC
AGCCTTCTAGATGTTGTATCCTTATTACTCATTACAGTGATTATTCTTTACAGCAAGCGCGATGGAAACTCGCAACAGAG
AAACAGTTTTGTACTACTTACATATAGGGGCTTCTTTTTCCAATTTTCCTGCACGATGCAACATGCTGCGCTGTAATCTG
GATTTTGCCAGCCTGATGTATCAATATCAACACTTGGTGGGCATTTTCGCATTTGAACCGAAAGGCCCTAGTTCATACAG
TTTTGTACCTCCTGAAACAATACCCCCTTGGAAGGTGTTGATATACTCCAAATTACAAAAGCTAGCTCAATAAAAGGGGT
AGAGATGAGTGGCCTCATGTATTTGCCTTATAAAAGAGGTAGAGATGAGTGGCCTCATGTATTTGCCTTCAGTTATAATT
TGTCTTCAGTTATAATTTGTGTATTATTTCCCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis