Browse Element(s) Details


Os.54640.1.S1_at

Description gb:AK106344.1
DB_XREF= gi:32991553
TID=Os.54640.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H02, full insert sequence.
FL= gb:AK106344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g402906/11ATPase, AAA family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40230NANA4+23713603..23714869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein
LOC_Os04g40260Os.54774.1.S1_x_at2/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40260Os.54774.1.S1_at1/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40270OsAffx.14215.1.S1_at11/114+23730035..23730310hypothetical protein
LOC_Os04g40279OsAffx.10250.3.S1_at4/114+23732589..23732974NA
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed
LOC_Os04g40320Os.27286.1.S1_at10/114+23749115..23753127expressed protein
LOC_Os04g40330OsAffx.14216.1.S1_x_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40330Os.9429.1.S1_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54640.1.S1_at--618--5671Chr04:23739883..23739907 (25 bp)
GACATCAAGGCATACGTTGGACCCC
LOC_Os04g40290
Os.54640.1.S1_at--602--8511Chr04:23739966..23739988 (23 bp)
TGGAATTCTTACACATACTCAGGGT
LOC_Os04g40290
Os.54640.1.S1_at--194--9911NONE
TACTCAGGGTGGCAATTCTCTCTGG
NONE
Os.54640.1.S1_at--758--8431Chr04:23740310..23740334 (25 bp)
TGGCCTACTCCATAAAGCTGCAGAA
LOC_Os04g40290
Os.54640.1.S1_at--1015--9271Chr04:23740464..23740488 (25 bp)
TCCTGGCACATGCTTCTGTTGCTAA
LOC_Os04g40290
Os.54640.1.S1_at--474--8811Chr04:23740480..23740504 (25 bp)
TGTTGCTAACCCTTCATGCTGCGAT
LOC_Os04g40290
Os.54640.1.S1_at--889--10291Chr04:23740513..23740537 (25 bp)
TTTCCTGCACGCTTTGATACAGACT
LOC_Os04g40290
Os.54640.1.S1_at--934--9491Chr04:23740551..23740575 (25 bp)
TCTCCGAGTCGCGTGGTTGATTGAT
NONE
Os.54640.1.S1_at--943--7911Chr04:23740565..23740589 (25 bp)
GGTTGATTGATTCCATGCCGGTCAC
NONE
Os.54640.1.S1_at--601--5871Chr04:23740669..23740693 (25 bp)
GAGCCTGGTGCTAAATACCGGCAGA
NONE
Os.54640.1.S1_at--28--5031Chr04:23740689..23740713 (25 bp)
GCAGACCCCTGCAATCTTTAGGTTT
NONE
Target Sequence 
GACATCAAGGCATACGTTGGACCCCCAACCCTTCAAGCACGATACGAAATTTTGAGGTCATGCTTACAGGAACTTTTGCG
AGTTGGAATTCTTACACATACTCAGGGTGGCAATTCTCTCTGGCCTACTCCATAAAGCTGCAGAAATATGTGAGGGATTA
AGCGGTCGAACATTGAGGAAACTTCCTTTCCTGGCACATGCTTCTGTTGCTAACCCTTCATGCTGCGATGCCTCTGCTTT
CCTGCACGCTTTGATACAGACTGCTCAAAGAGAGCTCTCCGAGTCGCGTGGTTGATTGATTCCATGCCGGTCACTTCGAA
GAGCAAATTGCTAACAGTTTCAATTCCAGAGATAGTTTTTAAGGGACCTCAAAGATAGCTGGAAGCTAATTCAGAGCCTG
GTGCTAAATACCGGCAGACCCCTGCAATCTTTAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis