Browse Element(s) Details


Os.54762.1.S1_at

Description gb:AK106706.1
DB_XREF= gi:32991915
TID=Os.54762.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E11, full insert sequence.
FL= gb:AK106706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5118011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54762.1.S1_at--400--3271Chr03:29234623..29234647 (25 bp)
CAAAATCTGTCGGTCCCTGGAAGGA
LOC_Os03g51180
Os.54762.1.S1_at--928--8191Chr03:29234573..29234597 (25 bp)
GGAAGATCGACTCGGCAGCAACTTT
LOC_Os03g51180
Os.54762.1.S1_at--114--1471Chr03:29234557..29234581 (25 bp)
AGCAACTTTCGCTTCCGGAACATGT
LOC_Os03g51180
Os.54762.1.S1_at--1150--2491Chr03:29234539..29234563 (25 bp)
AACATGTCCATCTTTATTCGAGCAG
LOC_Os03g51180
Os.54762.1.S1_at--311--91Chr03:29234524..29234548 (25 bp)
ATTCGAGCAGGCAGTCTTGGGCAGC
LOC_Os03g51180
Os.54762.1.S1_at--172--6371Chr03:29234482..29234506 (25 bp)
GATCTTCCCAGTGAACTTGACTACT
LOC_Os03g51180
Os.54762.1.S1_at--118--5711Chr03:29234464..29234488 (25 bp)
GACTACTTCGAGGTCGTGGTGTTCA
LOC_Os03g51180
Os.54762.1.S1_at--1000--4691Chr03:29233795..29233819 (25 bp)
GCGGCTGCGCTTTCCAGATATTGAT
LOC_Os03g51180
Os.54762.1.S1_at--808--7871Chr03:29233633..29233657 (25 bp)
GGTTTTTCTGAACAGTCCCTGGCAA
LOC_Os03g51180
Os.54762.1.S1_at--623--6571Chr03:29233538..29233562 (25 bp)
GATTCTTTCGCAACTCTTTTGGACA
LOC_Os03g51180
Os.54762.1.S1_at--678--8871Chr03:29233491..29233515 (25 bp)
TGATGTTTTTGGCACTTCGCTGGAA
LOC_Os03g51180
Target Sequence 
CAAAATCTGTCGGTCCCTGGAAGGAGTCTGATTGAACTGGGCAGTGTCCTGGAAGATCGACTCGGCAGCAACTTTCGCTT
CCGGAACATGTCCATCTTTATTCGAGCAGGCAGTCTTGGGCAGCCCTTCCCTCTGCTCACTGATCTTCCCAGTGAACTTG
ACTACTTCGAGGTCGTGGTGTTCATGGTTGGTACACCAGGGTACAGGCGGCTGCGCTTTCCAGATATTGATGCTGCATAG
GAGAAAAGGATAGGAATAGGACCAGGCAACACTTTCTTCCCCTCCCGGCCTCCCCTGGACAGTGTGGTCGACGCCTCCAC
CATTTTACAGCAACATGATGGCTTTGGAAGATTAGAAAAGTCCCCTTTGGTTTTTCTGAACAGTCCCTGGCAATGTATCA
GTTTACTGTCACTACTAGCAATAAGATAATCAGTTACCAAAAAAAAAAAAACAGTCCTGGACTGATTCTTTCGCAACTCT
TTTGGACATTAGGAGACGGCTTTGTTCTTCTGATGTTTTTGGCACTTCGCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis