Browse Element(s) Details


Os.54786.1.S1_at

Description gb:AK106769.1
DB_XREF= gi:32991978
TID=Os.54786.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F07, full insert sequence.
FL= gb:AK106769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3436011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein
LOC_Os08g34380Os.49821.1.S1_x_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34380Os.49821.2.S1_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34390Os.56875.1.S1_at11/118+21458160..21459197transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006109biological_processregulation of carbohydrate metabolism
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0008610biological_processlipid biosynthesis
GO:0009744biological_processresponse to sucrose stimulus
GO:0009887biological_processorgan morphogenesis
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54786.1.S1_at--373--1491Chr08:21435094..21435118 (25 bp)
AGCAGCAGCCAACCGTACCGAAGGA
LOC_Os08g34360
Os.54786.1.S1_at--295--5851Chr08:21435120..21435144 (25 bp)
GACCAGTACAACGTCGACATGTCGT
LOC_Os08g34360
Os.54786.1.S1_at--174--1911Chr08:21435178..21435202 (25 bp)
ACGTGCAGACGTACTTCGGGCTGGA
LOC_Os08g34360
Os.54786.1.S1_at--7--4271Chr08:21435222..21435246 (25 bp)
CCGGAGGTGGACACGTTCTTGTTCG
LOC_Os08g34360
Os.54786.1.S1_at--610--8391Chr08:21435266..21435290 (25 bp)
GGCGCCCATGTTTCAGTTCGAGCTC
LOC_Os08g34360
Os.54786.1.S1_at--857--9371Chr08:21435283..21435307 (25 bp)
TCGAGCTCGACGTCTGAACTCTCAA
LOC_Os08g34360
Os.54786.1.S1_at--610--4471Chr08:21435344..21435368 (25 bp)
GCCTGTTCCCGTAGATGGGCTGGAA
LOC_Os08g34360
Os.54786.1.S1_at--218--891Chr08:21435447..21435471 (25 bp)
AGGCCTCCCAAGTTTTGGCTGTCAA
LOC_Os08g34360
Os.54786.1.S1_at--650--1431Chr08:21435478..21435502 (25 bp)
AGAACTGAGTTCTCTCTCAAAAGAG
LOC_Os08g34360
Os.54786.1.S1_at--905--1951Chr08:21435523..21435547 (25 bp)
ACTGAGGATTAGTTGCTTACTCGCA
LOC_Os08g34360
Os.54786.1.S1_at--892--10411Chr08:21435584..21435608 (25 bp)
TTATTTGTTGCCCATCTCTGCGAAG
LOC_Os08g34360
Target Sequence 
AGCAGCAGCCAACCGTACCGAAGGACGACCAGTACAACGTCGACATGTCGTCGGTGGCGGCGGCGAGGTGCAGCTTCCCG
GACGACGTGCAGACGTACTTCGGGCTGGACGACGACGGCTTCGGGTACCCGGAGGTGGACACGTTCTTGTTCGGGGATTT
GGGCGCGTACGCGGCGCCCATGTTTCAGTTCGAGCTCGACGTCTGAACTCTCAACTCCGACCAGGGTGTTTCGGGAGGCC
CACAATCCCAGCCTGTTCCCGTAGATGGGCTGGAAAGATCGAATCAAATTTGGGCCTATTCAGGGGATGGGCTGGGAGAA
TTGATATGGGCCGGCAGGGATGGCCGAAAGGGAAGGCCTCCCAAGTTTTGGCTGTCAAGAAGCTAGAACTGAGTTCTCTC
TCAAAAGAGAGAGAGAGAGAGAAGCTAGAACTGAGGATTAGTTGCTTACTCGCAAATACTAGTAGTTTGGAGGAAGAGTA
AAATATTGGTTTATTTGTTGCCCATCTCTGCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis