Browse Element(s) Details


Os.54789.1.S1_at

Description gb:AK106775.1
DB_XREF= gi:32991984
TID=Os.54789.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G05, full insert sequence.
FL= gb:AK106775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3128010/11Gibberellin regulated protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31220Os.52749.1.S1_at6/115+18077106..18079883Cell division control protein 48 homolog B, putative
LOC_Os05g31230Os.17230.1.S1_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17230.1.S2_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17183.1.A1_s_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31254Os.49416.1.S1_at10/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.39411.1.A1_at4/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.45957.4.S1_x_at1/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31280Os.54789.1.S1_at10/115+18102682..18104050Gibberellin regulated protein, expressed
LOC_Os05g31290OsAffx.4487.1.S1_at11/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31290OsAffx.27100.1.S1_at10/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31300NANA5+18116949..18118275transposon protein, putative, Mariner sub-class
LOC_Os05g31310OsAffx.4488.1.S1_at11/115+18119606..18120087hypothetical protein
LOC_Os05g31310OsAffx.31273.1.S1_x_at1/115+18119606..18120087hypothetical protein
LOC_Os05g31320OsAffx.27101.1.S1_at10/115+18121933..18124518hypothetical protein
LOC_Os05g31320OsAffx.30485.1.S1_at1/115+18121933..18124518hypothetical protein
LOC_Os05g31330NANA5+18128706..18130556retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54789.1.S1_at--439--951Chr05:18103167..18103191 (25 bp)
AGGAAGCCGTGCATGTTCTTCTGCC
LOC_Os05g31280
Os.54789.1.S1_at--854--10551Chr05:18103152..18103176 (25 bp)
TTCTTCTGCCAGAAGTGCTGCGCCT
LOC_Os05g31280
Os.54789.1.S1_at--90--10831Chr05:18103066..18103090 (25 bp)
TTGGAAGACCAAGCGAGGAGGCCCC
LOC_Os05g31280
Os.54789.1.S1_at--789--9831Chr05:18102996..18103020 (25 bp)
TAAACCACCATTGTTGAGGGAGGGA
LOC_Os05g31280
Os.54789.1.S1_at--449--851Chr05:18102945..18102969 (25 bp)
ATGGCTGCAAGCTTTTCAGCCTTTG
LOC_Os05g31280
Os.54789.1.S1_at--156--10291Chr05:18102924..18102948 (25 bp)
TTTGCTCTGAGCTAAGGCACGGCCC
LOC_Os05g31280
Os.54789.1.S1_at--522--8411Chr05:18102904..18102928 (25 bp)
GGCCCTCATGCATCCAGAGTTTGTT
LOC_Os05g31280
Os.54789.1.S1_at--984--1291Chr05:18102872..18102896 (25 bp)
AGATGCGACTCTCTGTGTTCTTTTC
LOC_Os05g31280
Os.54789.1.S1_at--930--9511Chr05:18102814..18102838 (25 bp)
TCTCTGCTAGAGTGGTTGTTTGTCT
LOC_Os05g31280
Os.54789.1.S1_at--1025--7171Chr05:18102793..18102817 (25 bp)
GTCTGTATTGATTTCGTGGATCTTA
LOC_Os05g31280
Os.54789.1.S1_at--834--10731Chr05:18102682..18102706 (25 bp)
TTGTATGCTACTATGGGTTCTTTTC
NONE
Target Sequence 
AGGAAGCCGTGCATGTTCTTCTGCCAGAAGTGCTGCGCCTCCTGCCTCTGCGTGCTGCCGGGGACCTACGGCAACAAGCA
GTCGTGCCCCTGCTACAACGATTGGAAGACCAAGCGAGGAGGCCCCAAGTGCCCCTAGTTAATTCTTTTTTTTTTCATTT
TAGCAGCAAATTAAACCACCATTGTTGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGCCGCCATGGCTGCAAGCTTTTCA
GCCTTTGCTCTGAGCTAAGGCACGGCCCTCATGCATCCAGAGTTTGTTGAAATTCAGATGCGACTCTCTGTGTTCTTTTC
CTCTTGTTTTTTTTTTCTGTTCTTTTTGGGGTATCTCTGCTAGAGTGGTTGTTTGTCTGTATTGATTTCGTGGATCTTAA
GGTAGAAGATGAGTTGTCGAGATGAATTTTGATCGTGATGTGTTTCGAGTTTGTTTGTAATTTGTATGCAGTATTGAGGA
GTAATTTGTATGCTACTATGGGTTCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis