Browse Element(s) Details


Os.54845.1.S1_at

Description gb:AK106892.1
DB_XREF= gi:32992101
TID=Os.54845.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G07, full insert sequence.
FL= gb:AK106892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4674011/11RWD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46700Os.26865.1.S1_at10/112+28511390..28515488GCN5-related N-acetyltransferase, putative, expressed
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54845.1.S1_at--841--7191Chr02:28541589..28541613 (25 bp)
GTCGTGCAAGATGGCCGTGTCCAAG
LOC_Os02g46740
Os.54845.1.S1_at--399--1391Chr02:28541612..28541636 (25 bp)
AGACGGCCGGCTGCAACAAGATGGT
LOC_Os02g46740
Os.54845.1.S1_at--591--811Chr02:28541632..28541656 (25 bp)
ATGGTGTGTAGCAACTGCGGCCGCC
LOC_Os02g46740
Os.54845.1.S1_at--120--5171Chr02:28541803..28541827 (25 bp)
GCAAGCTGTTCGAGAGCGTCGGCAA
LOC_Os02g46740
Os.54845.1.S1_at--211--6491Chr02:28541909..28541933 (25 bp)
GATACGGGCTATCAGGTATCCCTGC
LOC_Os02g46740
Os.54845.1.S1_at--980--9411Chr02:28542229..28542253 (25 bp)
TCGGGCAACAATGACCTTCTAACGT
LOC_Os02g46740
Os.54845.1.S1_at--399--1331Chr02:28542256..28542280 (25 bp)
AGAGGATGCCGAACCCATTACTGCG
LOC_Os02g46740
Os.54845.1.S1_at--146--151Chr02:28542272..28542296 (25 bp)
ATTACTGCGCGCTGTGCTCGAAGAA
LOC_Os02g46740
Os.54845.1.S1_at--1041--2891Chr02:28542295..28542319 (25 bp)
AAGGTATGGAGCATCGCCGAGCACT
LOC_Os02g46740
Os.54845.1.S1_at--153--4511Chr02:28542310..28542334 (25 bp)
GCCGAGCACTATGGGCCAGCAGAAT
LOC_Os02g46740
Os.54845.1.S1_at--50--6091Chr02:28542366..28542390 (25 bp)
GAGTAGATGACCCACTGTTCACATA
LOC_Os02g46740
Target Sequence 
GTCGTGCAAGATGGCCGTGTCCAAGACGGCCGGCTGCAACAAGATGGTGTGTAGCAACTGCGGCCGCCCCTTCTGCTACC
GCTGCAGCAGGGCCATCACCAGCTACGAGCACTTCGCTGGGGAGTGCAAGCTGTTCGAGAGCGTCGGCAAGGGGTGGTTC
CCGGGGCAGGCGATGTGGATGAACCTCGAATACGACTACGACGAGATCGCCGAGATCGGGACGCCCTCGTGGATACGGGC
TATCAGGTATCCCTGCCCTACCTGCGGCGCCAAGCGCACCAAGTCGGGCAACAATGACCTTCTAACGTGCAGAGGATGCC
GAACCCATTACTGCGCGCTGTGCTCGAAGAAGGTATGGAGCATCGCCGAGCACTATGGGCCAGCAGAATGACTGACATGG
CAGTACATTAACTCAGCAAAGAGTAGATGACCCACTGTTCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis