Browse Element(s) Details


Os.54852.1.S1_at

Description gb:AK106907.1
DB_XREF= gi:32992116
TID=Os.54852.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A03, full insert sequence.
FL= gb:AK106907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5085011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g50860Os.21073.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50860Os.52685.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50870Os.780.1.S1_a_at11/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.53256.1.S1_at10/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.7070.1.S1_at8/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54852.1.S1_at--723--5051Chr04:29857367..29857391 (25 bp)
GCAGCAACCTGTACCCGTATATGTT
LOC_Os04g50850
Os.54852.1.S1_at--1103--591Chr04:29857416..29857440 (25 bp)
ATGCCGATGCTGGTGGACTCCGGAA
LOC_Os04g50850
Os.54852.1.S1_at--944--3831Chr04:29857547..29857571 (25 bp)
CTGCTACCTCGGAAACATGACGGAT
LOC_Os04g50850
Os.54852.1.S1_at--1008--4671Chr04:29857611..29857635 (25 bp)
GCGGATCTCGAGCTGTTTGGCACTT
LOC_Os04g50850
Os.54852.1.S1_at--1086--10631Chr04:29857634..29857658 (25 bp)
TTCGCTGTTCTTCACTGACGAGAAT
LOC_Os04g50850
Os.54852.1.S1_at--1072--1951Chr04:29857669..29857693 (25 bp)
ACTGGGTTTGTCTAGCTGTTGCTGC
LOC_Os04g50850
Os.54852.1.S1_at--787--7651Chr04:29857712..29857736 (25 bp)
GGGAGTGTATCCTCAGCGTAACATC
LOC_Os04g50850
Os.54852.1.S1_at--793--9711Chr04:29857735..29857759 (25 bp)
TCAACGTCGGGTATGATCTGTCCAC
LOC_Os04g50850
Os.54852.1.S1_at--894--7251Chr04:29857754..29857778 (25 bp)
GTCCACCATGGAGATAGCGTTTGAT
LOC_Os04g50850
Os.54852.1.S1_at--868--3111Chr04:29857821..29857845 (25 bp)
AATATTTTTCATGCTGTCGCTCTGC
LOC_Os04g50850
Os.54852.1.S1_at--564--10331Chr04:29857847..29857871 (25 bp)
TTTCAGCTCCTCTCTAATGTTAGTC
LOC_Os04g50850
Target Sequence 
GCAGCAACCTGTACCCGTATATGTTGCCGGAGAAGAAGCAGCAGCAGCCATGCCGATGCTGGTGGACTCCGGAACGACGC
TGCTCTGGCTACCGGGCAGCGTCTTCTACCCTCTGCAGAGGAGGATCGAGGAGGACATCTCTCTCACCAGGAGGTACGAC
CTCACGCATCCAAGCCTCTACTGCTACCTCGGAAACATGACGGATGTCGAGGCGGTTTCAGTGACGCTCGGCTTCGGTGG
AGGCGCGGATCTCGAGCTGTTTGGCACTTCGCTGTTCTTCACTGACGAGAATTTAACAGAAGACTGGGTTTGTCTAGCTG
TTGCTGCGGGGAACAGGGCGATACTGGGAGTGTATCCTCAGCGTAACATCAACGTCGGGTATGATCTGTCCACCATGGAG
ATAGCGTTTGATCGTGATCAGTGTGATCGTGTGTAGTGGTAGCTGATGTTTGTTAATATTTTTCATGCTGTCGCTCTGCA
TTTCAGCTCCTCTCTAATGTTAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis