Browse Element(s) Details


Os.54892.1.S1_at

Description gb:AK107023.1
DB_XREF= gi:32992232
TID=Os.54892.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A03, full insert sequence.
FL= gb:AK107023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3049011/11expressed protein
LOC_Os10g249401/11expressed protein
LOC_Os05g203101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30450OsAffx.22421.2.S1_at5/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.1.S1_at3/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.4.S1_x_at2/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.3.S1_at1/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30460OsAffx.7866.1.S1_x_at1/118+18616890..18617456hypothetical protein
LOC_Os08g30470OsAffx.29436.1.S1_at11/118+18619456..18620884hypothetical protein
LOC_Os08g30480OsAffx.17241.1.S1_at11/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30480Os.12924.1.S1_s_at10/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30490Os.54892.1.S1_at11/118+18632454..18635218expressed protein
LOC_Os08g30500NANA8+18635935..18636243hypothetical protein
LOC_Os08g30510Os.11326.1.S1_at5/118+18637479..18638591expressed protein
LOC_Os08g30520Os.7577.1.S1_at11/118+18643961..18645898expressed protein
LOC_Os08g30529NANA8+18653734..18654343NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54892.1.S1_at--258--9171Chr08:18634547..18634571 (25 bp)
TGCCGCGCGGTTATCCCAAGTGAAA
LOC_Os08g30490
Os.54892.1.S1_at--566--352Chr11:3675891..3675915 (25 bp)
ATAACGCTTCTGTCATTAGGCATGT
NONE
Os.54892.1.S1_at--987--9131Chr08:18634777..18634801 (25 bp)
TGCGGCTACCATGCACAGACAAAGC
LOC_Os08g30490
Os.54892.1.S1_at--360--2351Chr08:18634797..18634821 (25 bp)
AAAGCTGAACTGTCGTACGGTACAC
LOC_Os08g30490
Os.54892.1.S1_at--203--6992Chr11:3675949..3675973 (25 bp)
GTACGGTACACCCAACATGCATGAA
NONE
Os.54892.1.S1_at--56--6291Chr08:18634836..18634860 (25 bp)
GATGTTACTAATCCCAGTACGGCTG
LOC_Os08g30490
Os.54892.1.S1_at--216--6011Chr08:18634882..18634906 (25 bp)
GAGAGAGGTACCCATTATTGACAAA
LOC_Os08g30490
Os.54892.1.S1_at--1149--6412Chr11:3676210..3676234 (25 bp)
GATCTCAAGATTCCACGACCAAAAT
NONE
Os.54892.1.S1_at--137--4072Chr11:3676225..3676660 (25 bp)
CGACCAAAATGGCTACTCCTACATC
NONE
Os.54892.1.S1_at--770--9874Chr10:12505089..12505108 (20 bp)
TACATCCTCATCTGTTTCAGGTTGA
LOC_Os10g24940
Os.54892.1.S1_at--811--10191Chr08:18635190..18635214 (25 bp)
TATTTGGATATGAGCAGCCCCGCTT
LOC_Os08g30490
Target Sequence 
TGCCGCGCGGTTATCCCAAGTGAAATCAATGTTCCAAAAGACCGTGAGAACTGTCAACAGATCAACAAGAACTCTACATA
TAAGATTCAGAGAACCTCAACTATTGGATTTGGCTATGAAAATAACGCTTCTGTCATTAGGCATGTGCGGCTACCATGCA
CAGACAAAGCTGAACTGTCGTACGGTACACCCAACATGCATGAAGATGTTACTAATCCCAGTACGGCTGAACTAAAAAGG
AAGTGTGCTAGAGAGAGGTACCCATTATTGACAAAAGAGCTAAAGGAAGATAGAAACAAGAAGAGACGTGATTCCAGAAA
GCGGAGGAAGGATGAATCAATTGGTTTTTATAAATTAACACATCTATTGTTATCAAAATTTGGACTTTTTGAACACAACA
CCTTATTATTATTGAATTAATTCAACTCTTTCATATCATGGATCTCAAGATTCCACGACCAAAATGGCTACTCCTACATC
CTCATCTGTTTCAGGTTGATGTGTAATATTTCACATGTAGAAATTTGTTAGGTGTTTTGTACCAAATACGTTCTAATCTA
TTTGGATATGAGCAGCCCCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis