Browse Element(s) Details


Os.54960.1.S1_at

Description gb:AK107192.1
DB_XREF= gi:32992401
TID=Os.54960.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A05, full insert sequence.
FL= gb:AK107192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2554011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25480OsAffx.14827.1.S1_at11/115+14738266..14740584expressed protein
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25500OsAffx.4426.1.S1_at11/115+14747224..14747754hypothetical protein
LOC_Os05g25510OsAffx.4427.1.S1_at11/115+14748062..14748397hypothetical protein
LOC_Os05g25520NANA5+14754772..14755125hypothetical protein
LOC_Os05g25530OsAffx.14828.1.S1_at11/115+14759455..14759947hypothetical protein
LOC_Os05g25540Os.54960.1.S1_at11/115+14762435..14765963Protein kinase domain containing protein, expressed
LOC_Os05g25550Os.52873.1.S1_a_at11/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550OsAffx.5813.1.S1_x_at2/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550Os.8093.2.S1_x_at1/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25560OsAffx.14829.1.S1_x_at11/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25560OsAffx.14829.2.S1_x_at3/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25570OsAffx.380.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.25972.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.15069.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25580NANA5+14788494..14791639F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54960.1.S1_at--1088--8751Chr05:14764953..14764977 (25 bp)
TGTAGCTCCTGAGTACTTGTTGGAT
LOC_Os05g25540
Os.54960.1.S1_at--469--6931Chr05:14765129..14765153 (25 bp)
GTAGTGCTTCTAGAGCTCCTTATGG
LOC_Os05g25540
Os.54960.1.S1_at--150--811Chr05:14765433..14765454 (22 bp)
ATGGGCAATGCCACAGTTGACCGAC
LOC_Os05g25540
Os.54960.1.S1_at--38--9311Chr05:14765465..14765489 (25 bp)
TCCCCAGCATAGTTGACCCAGTGAT
LOC_Os05g25540
Os.54960.1.S1_at--1003--2471Chr05:14765510..14765621 (25 bp)
AACACCTGTACCAAGTTGCAGCAGT
LOC_Os05g25540
Os.54960.1.S1_at--629--1531Chr05:14765616..14765640 (25 bp)
AGCAGTGGCTGTTCTATGCGTGCAG
LOC_Os05g25540
Os.54960.1.S1_at--698--611Chr05:14765631..14765655 (25 bp)
ATGCGTGCAGGCTGAACCAAGCTAC
LOC_Os05g25540
Os.54960.1.S1_at--992--9551Chr05:14765685..14765709 (25 bp)
TCTTGTTCCTCTAGTGCCGACGGAG
LOC_Os05g25540
Os.54960.1.S1_at--935--10451Chr05:14765858..14765882 (25 bp)
TTACCTGTACTTGCTCCTTGTTTGA
LOC_Os05g25540
Os.54960.1.S1_at--391--6011Chr05:14765887..14765911 (25 bp)
GAGAGTTAGTCCAACCTATCGCTTC
LOC_Os05g25540
Os.54960.1.S1_at--1149--5971Chr05:14765925..14765949 (25 bp)
GAGACAAGTCTCACTTTCATACTCC
LOC_Os05g25540
Target Sequence 
TGTAGCTCCTGAGTACTTGTTGGATGGGAAGTTGACTGAAAAGAGCGATGTATACGCGTTCGGAGTAGTGCTTCTAGAGC
TCCTTATGGGGAGGAAGCCTGTTGAGAAGATGTCACCATCTCAGTGCCAATCAATTGTGACATGGGCAATGCCACAGTTG
ACCGACAGATCGAAGCTCCCCAGCATAGTTGACCCAGTGATCAAGGACACCATGGATCCAAAACACCTGTACCAAGTTGC
AGCAGTGGCTGTTCTATGCGTGCAGGCTGAACCAAGCTACAGGCCACTGATCACAGATGTGCTCCACTCTCTTGTTCCTC
TAGTGCCGACGGAGCTCGGAGGAACACTAAGAGCTGGAGAGCCACCTTCCCCGAACCTGAGGAATTCTCCATGCTGATAT
CTGAATATCTGATACAGCAAGTTTGTCAAAGCAAGGGAAAATATTTATACAGTTTAGTATAGATTCTTATGTATAACTTA
TGTTACCTGTACTTGCTCCTTGTTTGAGGACGAGAGTTAGTCCAACCTATCGCTTCTTGGTTGGATTGAGAGACAAGTCT
CACTTTCATACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis