Browse Element(s) Details


Os.55127.1.S1_at

Description gb:AK107533.1
DB_XREF= gi:32992742
TID=Os.55127.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H01, full insert sequence.
FL= gb:AK107533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g048301/11retrotransposon protein, putative, unclassified
LOC_Os10g133401/11retrotransposon protein, putative, unclassified
LOC_Os09g091901/11retrotransposon protein, putative, unclassified
LOC_Os07g354401/11retrotransposon protein, putative, unclassified
LOC_Os08g240801/11retrotransposon protein, putative, unclassified
LOC_Os01g409001/11retrotransposon protein, putative, unclassified
LOC_Os12g289301/11retrotransposon protein, putative, unclassified
LOC_Os10g173201/11retrotransposon protein, putative, unclassified
LOC_Os10g185901/11retrotransposon protein, putative, unclassified
LOC_Os08g085401/11retrotransposon protein, putative, unclassified
LOC_Os10g031501/11retrotransposon protein, putative, unclassified
LOC_Os09g131401/11retrotransposon protein, putative, unclassified
LOC_Os09g238401/11retrotransposon protein, putative, unclassified
LOC_Os03g232301/11retrotransposon protein, putative, unclassified
LOC_Os03g231401/11retrotransposon protein, putative, unclassified
LOC_Os02g238281/11retrotransposon protein, putative, unclassified
LOC_Os05g177201/11retrotransposon protein, putative, unclassified
LOC_Os10g115601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04800OsAffx.25862.2.S1_at9/114+2287918..2289845Protein kinase domain containing protein
LOC_Os04g04810NANA4+2302334..2303979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04820OsAffx.31869.1.S1_at11/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.3.S1_s_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.5.S1_x_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.2.S1_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.3.S1_s_at10/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.1.S1_x_at9/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.3.S1_x_at7/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.53142.1.S1_at2/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.24831.4.S1_x_at2/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04830Os.55127.1.S1_at1/114+2312484..2315377retrotransposon protein, putative, unclassified
LOC_Os04g04840NANA4+2315782..2316326retrotransposon protein, putative, unclassified
LOC_Os04g04850Os.10731.1.A1_a_at11/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850Os.38764.1.S1_x_at8/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850Os.48015.1.A1_x_at2/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850OsAffx.16430.1.S1_at2/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04850Os.45173.1.S1_x_at2/114+2322820..2326447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04860NANA4+2328858..2331679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04870NANA4+2334655..2335116retrotransposon protein, putative, unclassified
LOC_Os04g04880NANA4+2336394..2340601retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55127.1.S1_at--129--4291NONE
CCTCGTCGCGTGGTGAAGTTGTTTC
NONE
Os.55127.1.S1_at--823--7231NONE
GTCGCGTGGTGAAGTTGTTTCTCTC
NONE
Os.55127.1.S1_at--940--57914Chr08:14419761..14419784 (24 bp)
GACCGTTATTCGCTTCAACCAGCAG
LOC_Os08g24080
Os.55127.1.S1_at--483--10211NONE
TATTCGCTTCAACCAGCAGTCAGAA
NONE
Os.55127.1.S1_at--6--472Chr08:17822955..17822979 (25 bp)
ATCTCTCCAGAACTAGAATGAGTAG
NONE
Os.55127.1.S1_at--1129--14517Chr09:2438585..2438609 (25 bp)
AGAATGAGTAGCCATGTTTGTGATT
NONE
Os.55127.1.S1_at--1144--66915Chr09:2438614..2438634 (21 bp)
GTTCGCTACTTATCACTGTAACCGG
NONE
Os.55127.1.S1_at--299--4859Chr10:8281083..8281107 (25 bp)
GCTACTTATCACTGTAACCGGGAGT
NONE
Os.55127.1.S1_at--484--8731Chr08:17822896..17822920 (25 bp)
TGTAACCGGGAGTTTCAGCAGTCAT
NONE
Os.55127.1.S1_at--876--1197Chr10:6950403..6950821 (25 bp)
AGTTTGTTATGTTTATGGATGAATC
NONE
Os.55127.1.S1_at--281--4121Chr12:20390482..20390547 (25 bp)
ATCATGTCGAGGATACAATGTACCG
NONE
Target Sequence 
CCTCGTCGCGTGGTGAAGTTGTTTCTCTCCCCGACCTACTCCAGGCCGAGCGAAGGGAAATCAACCTCAGGAGGGCGATA
CCAAGCAGAAGACCGTTATTCGCTTCAACCAGCAGTCAGAAGGAAGCTTCTCCTGTGAATGATAGCAATATGCAGTCCTA
TCACATCATCACAGAACCAATCAAGGATGATGCAGTCACTAGAACAATGCCAGCTATATCTCTCCAGAACTAGAATGAGT
AGCCATGTTTGTGATTTTCAGTTCGCTACTTATCACTGTAACCGGGAGTTTCAGCAGTCATGTAATAAATAAATATATTC
ATGATTATAAACAATGAGTTTGTTATGTTTATGGATGAATCATGTCGAGGATACAATGTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis