Browse Element(s) Details


Os.55142.1.S1_at

Description gb:AK107577.1
DB_XREF= gi:32992786
TID=Os.55142.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D11, full insert sequence.
FL= gb:AK107577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2033011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20290NANA11+11700854..11706670retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.1.S1_at8/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.5.S1_x_at5/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.2.S1_x_at4/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20310Os.15351.1.S1_at4/1111+11713992..11716967hypothetical protein
LOC_Os11g20320OsAffx.30285.1.S1_at2/1111+11718477..11719756hypothetical protein
LOC_Os11g20330Os.55142.1.S1_at11/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.7163.1.S1_at10/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_x_at2/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.25473.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55142.1.S1_at--525--8231Chr11:11733511..11733535 (25 bp)
GGCAACAGTGCCAATCTAAGCGAGG
LOC_Os11g20330
Os.55142.1.S1_at--251--1531Chr11:11733395..11733419 (25 bp)
AGCAGGGACTGGTCTTCGCTCACGG
LOC_Os11g20330
Os.55142.1.S1_at--643--10751Chr11:11733263..11733287 (25 bp)
TTGAGCGATTTTGTGGATGGCGAAT
LOC_Os11g20330
Os.55142.1.S1_at--605--871Chr11:11733247..11733271 (25 bp)
ATGGCGAATCATGTCTAGGCTGAGC
LOC_Os11g20330
Os.55142.1.S1_at--721--8131Chr11:11733160..11733184 (25 bp)
GGAAAACTACGATGCGGTGACGAAA
LOC_Os11g20330
Os.55142.1.S1_at--115--7391Chr11:11733127..11733151 (25 bp)
GTGAGGAATTTGCTACGCTAGGTTA
LOC_Os11g20330
Os.55142.1.S1_at--775--3551Chr11:11733110..11733134 (25 bp)
CTAGGTTAGCGCGTGGAGGAATTTA
LOC_Os11g20330
Os.55142.1.S1_at--976--211Chr11:11733068..11733092 (25 bp)
ATTTGGTGCATTCGCATGTGGGCCT
LOC_Os11g20330
Os.55142.1.S1_at--620--791Chr11:11733053..11733077 (25 bp)
ATGTGGGCCTAGTTTCCTCTAATGA
LOC_Os11g20330
Os.55142.1.S1_at--179--6851Chr11:11733042..11733066 (25 bp)
GTTTCCTCTAATGATTTCACCATAG
LOC_Os11g20330
Os.55142.1.S1_at--786--10511Chr11:11733027..11733051 (25 bp)
TTCACCATAGGATTGGATAGGCACA
LOC_Os11g20330
Target Sequence 
GGCAACAGTGCCAATCTAAGCGAGGGCGAACAACGCCCCCACTCTCTCGTCGCCCACGGGAGCACAGTCGGGGTCAGGTG
GGAAGGAGGAAGTGATGTTGAGGCCGTGCTTGCGGGAGCAGGGACTGGTCTTCGCTCACGGCGGATCTCCGTCGCGCCGC
CTCAAACCCCACCGTCAGGCAGATCTCCGGCGAGGCTGTGTGCAGTTGTGGTGAAGGAGATGACCAGCAAGTCAAGTGGA
GGAAGAGATTGAGCGATTTTGTGGATGGCGAATCATGTCTAGGCTGAGCGATTTTGTGGAGGGAGAGCTAAGGAGAGGAG
GACGCTATCGGCGGCATGATGACCGATGAGGGGAAAACTACGATGCGGTGACGAAAGGAGTGGGGTGAGGAATTTGCTAC
GCTAGGTTAGCGCGTGGAGGAATTTATGGTGGTGGGGACGAGGATTTGGTGCATTCGCATGTGGGCCTAGTTTCCTCTAA
TGATTTCACCATAGGATTGGATAGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis