Browse Element(s) Details


Os.55230.1.S1_at

Description gb:AK107699.1
DB_XREF= gi:32992908
TID=Os.55230.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C09, full insert sequence.
FL= gb:AK107699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3388211/11expressed protein
LOC_Os11g105304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55230.1.S1_at--1148--1391Chr09:20006531..20006555 (25 bp)
AGACGGTGCGGCTCCACCGCGGATC
LOC_Os09g33882
Os.55230.1.S1_at--545--8252Chr09:20006598..20006622 (25 bp)
GGCACGGCTCCATCACGGATCGAGG
LOC_Os09g33882
Os.55230.1.S1_at--25--3352Chr09:20006600..20006624 (25 bp)
CACGGCTCCATCACGGATCGAGGTG
LOC_Os09g33882
Os.55230.1.S1_at--171--4294Chr09:20007021..20007045 (25 bp)
CCTCGTGAGCACAGGTATGATTTCC
LOC_Os09g33882
Os.55230.1.S1_at--97--7394Chr09:20007025..20007049 (25 bp)
GTGAGCACAGGTATGATTTCCAGAT
LOC_Os09g33882
Os.55230.1.S1_at--42--5131Chr09:20007029..20007053 (25 bp)
GCACAGGTATGATTTCCAGATGATG
LOC_Os09g33882
Os.55230.1.S1_at--370--3851Chr09:20007089..20007113 (25 bp)
CTGCAGGACGATGGCACCATGTGCT
LOC_Os09g33882
Os.55230.1.S1_at--797--5771Chr09:20007095..20007119 (25 bp)
GACGATGGCACCATGTGCTTTTTGT
LOC_Os09g33882
Os.55230.1.S1_at--978--5071Chr09:20007102..20007126 (25 bp)
GCACCATGTGCTTTTTGTTTTTCTG
LOC_Os09g33882
Os.55230.1.S1_at--636--10572Chr09:20007122..20007146 (25 bp)
TTCTGAACGAATCGGCAAACTGCCA
LOC_Os09g33882
Os.55230.1.S1_at--498--5193Chr10:19659956..19659978 (23 bp)
GAATCGGCAAACTGCCAATTTCATT
NONE
Target Sequence 
AGACGGTGCGGCTCCACCGCGGATCGAGCCGGCGGCGGTGGCTCCCGGCGGAGGCGGCAGCGGTGGCGGCACGGCTCCAT
CACGGATCGAGGTGGCGGCGGCGGCTCCCGGCGGAGGCGGCGGCGGTGACAGCTTCGACTTCGCGGTGTGCTCCACCGCG
TTTTGAGGCGGCGGCAGCTGGGCGTGCTCCTTCAGTCCTCCTCCCGTCTCCAACTCCCCCCAAGACTGTTCCTTCTTTCG
GCGGCGGATGGAGGCACCGGCGGACGGCGGCTACCTGCTTGGTGGCCAACCGGCGAGGTGCTCCGGAGGACACTCCACCG
GCAGCAACGGCGAGGGTTTCGGAGGACACCCGGCCACATCGCCATCTTCATCTAGCTGGGTTTCTCTCCCTCGTGAGCAC
AGGTATGATTTCCAGATGATGGGAGGAGCTGGTCAAGGGCACACCGCACACTCGACCTGCAGGACGATGGCACCATGTGC
TTTTTGTTTTTCTGAACGAATCGGCAAACTGCCAATTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis