Browse Element(s) Details


Os.5530.3.S1_x_at

Description gb:CF319006
DB_XREF= gi:33690767
DB_XREF=HD--09-F17.g1
CLONE=HD--09-F17
TID=Os.5530.3
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5530 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g541907/11expressed protein
LOC_Os05g271106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein
LOC_Os01g54200Os.55324.1.S1_at5/111+31497377..31497561NA
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5530.3.S1_x_at--113--6372Chr01:31492628..31492649 (22 bp)
GATCCACCGGCTCTGACGCCGATGA
LOC_Os01g54190
Os.5530.3.S1_x_at--931--8931Chr05:15700569..15700593 (25 bp)
TGACGCCGATGAACGCGGGTCAGCT
NONE
Os.5530.3.S1_x_at--862--8972Chr01:31492652..31492674 (23 bp)
TGAACGCGGGTCAGCTAGATCCAGC
LOC_Os01g54190
Os.5530.3.S1_x_at--630--4212Chr01:31492695..31492719 (25 bp)
CCGAATATTCCACTTACGAGCCCTG
LOC_Os01g54190
Os.5530.3.S1_x_at--856--8711Chr05:15700492..15700516 (25 bp)
TGTCGCCACGTCTGGAGGTCATGTT
NONE
Os.5530.3.S1_x_at--609--4191Chr05:15700147..15700279 (25 bp)
CCCTCCTCAGGTTAATGCAGAAGTT
LOC_Os05g27110
Os.5530.3.S1_x_at--298--2732Chr01:31493105..31493129 (25 bp)
AAGACTTACAGGCAAGCTACCTCTC
LOC_Os01g54190
Os.5530.3.S1_x_at--862--9232Chr01:31493314..31493334 (21 bp)
TCCATGGTGGAGAACTTGGAGCTCA
LOC_Os01g54190
Os.5530.3.S1_x_at--897--10852Chr01:31493325..31493349 (25 bp)
TTGGAGCTCAGATTTGATTTCTCGT
LOC_Os01g54190
Os.5530.3.S1_x_at--388--6532Chr01:31493340..31493364 (25 bp)
GATTTCTCGTGTAGCTAGTAACTAC
LOC_Os01g54190
Os.5530.3.S1_x_at--1038--6951Chr05:15699446..15699879 (25 bp)
GTAGCTAGTAACTACTCAAGATTGG
LOC_Os05g27110
Target Sequence 
GATCCACCGGCTCTGACGCCGATGAACGCGGGTCAGCTAGATCCAGCGCCACCTGCTCCATACTCCCCCGAATATTCCAC
TTACGAGCCCTGTCGCCACGTCTGGAGGTCATGTTCCCCACTTCGGTGCTGCCGCCGTACTTGCGGCTCTCCCCCCTCTT
CCTGCTGCTCCAGCTCTAGCCCTCCCTCCGCAACATCCTCTCCTTTGCCCTACTCGCCAGAGCAATGGGGACACCAGACT
GCCGGCAATGAGTCCGGGGCAGCCAGATCCAGCGCCACCTCACCCATGGCAGTTGCTCCGGCGCGACGATGGCCAGGGGC
NGCGCTGCCCTCCTCAGGTTAATGCAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCAT
GGTGGAGAACTTGGAGCTCAGATTTGATTTCTCGTGTAGCTAGTAACTACTCAAGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5530.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis