Browse Element(s) Details


Os.55316.1.S1_at

Description gb:AK107852.1
DB_XREF= gi:32993061
TID=Os.55316.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A10, full insert sequence.
FL= gb:AK107852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g342605/11AP2 domain containing protein
LOC_Os02g342701/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34210OsAffx.16467.1.S1_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.2.S1_s_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.6.S1_s_at8/112+20460825..20462776hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_x_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34240OsAffx.12345.1.S1_at9/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34240OsAffx.9423.1.S1_x_at1/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34250OsAffx.2855.1.S1_at11/112+20483394..20484110expressed protein
LOC_Os02g34260Os.55316.1.S1_at5/112+20485245..20486000AP2 domain containing protein
LOC_Os02g34270Os.55316.1.S1_at1/112+20493260..20494008AP2 domain containing protein, expressed
LOC_Os02g34280OsAffx.28601.3.S1_x_at9/112+20502686..20503880hypothetical protein
LOC_Os02g34280OsAffx.28601.3.S1_at7/112+20502686..20503880hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55316.1.S1_at--318--8271Chr02:20485399..20485423 (25 bp)
GGCAGGGTCACGATGTCGATCACAT
LOC_Os02g34260
Os.55316.1.S1_at--609--6271Chr02:20485388..20485412 (25 bp)
GATGTCGATCACATGTCCTGCTCGC
LOC_Os02g34260
Os.55316.1.S1_at--205--471Chr02:20485355..20485379 (25 bp)
ATCTCGAACGCTCGCTTTCTGGGTT
LOC_Os02g34260
Os.55316.1.S1_at--630--9431Chr02:20485338..20485362 (25 bp)
TCTGGGTTCGTGGACCTTCGGACCG
LOC_Os02g34260
Os.55316.1.S1_at--759--5772Chr02:20485278..20485302 (25 bp)
GACGACTCTGCTTGGTGGGAGCCAT
LOC_Os02g34260
Os.55316.1.S1_at--789--7831Chr02:20485176..20485200 (25 bp)
GGTACTCCTAGTCCACAGAACTTGA
NONE
Os.55316.1.S1_at--173--5211Chr02:20485153..20485177 (25 bp)
GAATTAGACTCGCATTTCGTTTTTT
NONE
Os.55316.1.S1_at--893--9771Chr02:20485101..20485125 (25 bp)
TAAGTTGGTGGTGTAGCCTTTTCTT
NONE
Os.55316.1.S1_at--351--9572Chr02:20493099..20493123 (25 bp)
TCTTCTTTTCGTTCTTCTTGGATAA
NONE
Os.55316.1.S1_at--654--6732Chr02:20493089..20493113 (25 bp)
GTTCTTCTTGGATAATGCTGCTGCA
NONE
Os.55316.1.S1_at--309--4771Chr02:20485043..20485067 (25 bp)
GCTGCATTTTGTTCGATATTATCGG
NONE
Target Sequence 
GGCAGGGTCACGATGTCGATCACATGTCCTGCTCGCCGCCGTCGATCTCGAACGCTCGCTTTCTGGGTTCGTGGACCTTC
GGACCGCCGCAGCCGCCATCGCGGTCCGTCGCGGCGGCGGCGACGACTCTGCTTGGTGGGAGCCATGGAGGCAACGGAGC
AGAGAACGGGAGGGAATAGCGCGCGAGACAAAAAGGGCTGGAGAGATGGGAATCGTCGTCCCGGGTACTCCTAGTCCACA
GAACTTGAATTAGACTCGCATTTCGTTTTTTTTCGGCATAGTAGTATTTATTTTGTTTTAAGTTGGTGGTGTAGCCTTTT
CTTTTCTTCTTCTTTTCGTTCTTCTTGGATAATGCTGCTGCATTTTGTTCGATATTATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis