Browse Element(s) Details


Os.55324.1.S1_at

Description gb:AK107872.1
DB_XREF= gi:32993081
TID=Os.55324.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-C09, full insert sequence.
FL= gb:AK107872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g542005/11
LOC_Os08g349703/11Sec34-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein
LOC_Os01g54200Os.55324.1.S1_at5/111+31497377..31497561NA
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55324.1.S1_at--721--4551Chr01:31497543..31497567 (25 bp)
GCGCCAATGGCGACGATTTCGGAGA
NONE
Os.55324.1.S1_at--1003--5731Chr01:31497532..31497556 (25 bp)
GACGATTTCGGAGACACTGCCCAAC
LOC_Os01g54200
Os.55324.1.S1_at--602--10611Chr01:31497526..31497550 (25 bp)
TTCGGAGACACTGCCCAACTCGGAG
LOC_Os01g54200
Os.55324.1.S1_at--160--8072Chr08:21881292..21881316 (25 bp)
GGAGAAGGTCGGTTTCCTCGCTTCG
LOC_Os08g34970
Os.55324.1.S1_at--345--7711Chr01:31497427..31497451 (25 bp)
GGGTGTGTGGTCCAGTGGTAGCACT
LOC_Os01g54200
Os.55324.1.S1_at--48--10031Chr01:31497409..31497433 (25 bp)
TAGCACTGGTGGATCTGGTGGATCT
LOC_Os01g54200
Os.55324.1.S1_at--487--9231Chr01:31497366..31497390 (25 bp)
TCCAGTGTGTTTGATCCATAGTCCC
NONE
Os.55324.1.S1_at--127--6371Chr01:31497354..31497378 (25 bp)
GATCCATAGTCCCTGTTGCTTGCGA
NONE
Os.55324.1.S1_at--512--6672Chr08:21881531..21881555 (25 bp)
GTTGCTTGCGATGACTAAATGTTGT
LOC_Os08g34970
Os.55324.1.S1_at--465--6631Chr01:31497320..31497344 (25 bp)
GTTGTGAACTGATGCTACCATGGTT
NONE
Os.55324.1.S1_at--901--6332Chr08:21881561..21881585 (25 bp)
GATGCTACCATGGTTTGGTTTAGTT
LOC_Os08g34970
Target Sequence 
GCGCCAATGGCGACGATTTCGGAGACACTGCCCAACTCGGAGGCCGTCTCCCACGCCTACAAGTTCGCCTCCACCTGGGA
GAAGGTCGGTTTCCTCGCTTCGCTGCGTGGTCGGGTGGGTGTGTGGTCCAGTGGTAGCACTGGTGGATCTGGTGGATCTG
ATCTGATCTGATGGTGATCCAGTGTGTTTGATCCATAGTCCCTGTTGCTTGCGATGACTAAATGTTGTGAACTGATGCTA
CCATGGTTTGGTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis