Browse Element(s) Details


Os.55373.1.S1_at

Description gb:AK107965.1
DB_XREF= gi:32993174
TID=Os.55373.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D01, full insert sequence.
FL= gb:AK107965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g465005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55373.1.S1_at--802--7871Chr05:26854260..26854284 (25 bp)
GGTTTCATCATCGATCGGTTTCATC
LOC_Os05g46500
Os.55373.1.S1_at--1119--1451Chr05:26854307..26854331 (25 bp)
AGAATTCGATCTTTCGGTTCTCGGT
LOC_Os05g46500
Os.55373.1.S1_at--36--4211Chr05:26854340..26854364 (25 bp)
CCCCGTGTTTTCTTCGTATATAGCG
LOC_Os05g46500
Os.55373.1.S1_at--154--10191Chr05:26854356..26854380 (25 bp)
TATATAGCGGATCTTCTGGGTCTCT
LOC_Os05g46500
Os.55373.1.S1_at--540--8631Chr05:26854372..26854668 (25 bp)
TGGGTCTCTGATCCTGTGAACTTCG
LOC_Os05g46500
Os.55373.1.S1_at--438--9411Chr05:26854752..26854776 (25 bp)
TCGTCGTGATCCGTCGAGAGCTAGA
NONE
Os.55373.1.S1_at--779--5711Chr05:26854779..26854803 (25 bp)
GACTCATCGTCTCATCATCTGTACA
NONE
Os.55373.1.S1_at--205--8751Chr05:26854798..26854822 (25 bp)
TGTACATACATGCAATTCCCCATCT
NONE
Os.55373.1.S1_at--156--6411Chr05:26854823..26854847 (25 bp)
GATCGGATCATGCTCCAATCCATTA
NONE
Os.55373.1.S1_at--24--3031Chr05:26854839..26854863 (25 bp)
AATCCATTAGTCCATTTCGTAGCCT
NONE
Os.55373.1.S1_at--937--2971Chr05:26854991..26855015 (25 bp)
AATGTGTCCGTGGAGTATCATCTGC
NONE
Target Sequence 
GGTTTCATCATCGATCGGTTTCATCCACTATCTTCCCCTCCCCAATAAGAATTCGATCTTTCGGTTCTCGGTGAACCACC
CCCCGTGTTTTCTTCGTATATAGCGGATCTTCTGGGTCTCTGATCCTGTGAACTTCGGGAATTTTTGTGATCGATCGATC
GATCCATGGCGGGGCTGCAGCGGTCGAGCGAGACGTTCCGGCGGTCGGGCTCGTCGGGGCTCGTGCGGGACGACAGGCAC
CTGTCCGGGGAGATCAAGCCGCCGTCGCCGGCGGCAAGGCCAAGGCTAGGCGCCACTCGTCGTCGTGATCCGTCGAGAGC
TAGAGCGACTCATCGTCTCATCATCTGTACATACATGCAATTCCCCATCTGATCGGATCATGCTCCAATCCATTAGTCCA
TTTCGTAGCCTTTTTATTTTTTCATATAGTTTCTTTGCTTATCTTGTAAATTGTTTCATGTCAAGTAGGTGATTAGCACT
AGAAAACTATGACGTGCAAGCAACTATGAACTATTAAGTATTTTTCATGTGAACAGTGAATGTGTCCGTGGAGTATCATC
TGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis