Browse Element(s) Details


Os.55390.1.S1_x_at

Description gb:AK107995.1
DB_XREF= gi:32993204
TID=Os.55390.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-F12, full insert sequence.
FL= gb:AK107995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g329304/11hypothetical protein
LOC_Os02g328141/11heavy metal-associated domain containing protein, expressed
LOC_Os11g084701/11Heat shock cognate 70 kDa protein, putative
LOC_Os04g469501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein
LOC_Os12g32890OsAffx.19941.1.S1_at10/1112+19848235..19849516hypothetical protein
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006457biological_processprotein folding
GO:0006827biological_processhigh affinity iron ion transport
GO:0006878biological_processcopper ion homeostasis
GO:0007568biological_processaging
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0016531molecular_functioncopper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55390.1.S1_x_at--487--8711Chr12:19866022..19866046 (25 bp)
TGTCCGCCACGGAGAGATCGAGTGC
LOC_Os12g32930
Os.55390.1.S1_x_at--728--6016Chr08:22320042..22320066 (25 bp)
GAGAGATCGAGTGCCGCCGCATCCT
NONE
Os.55390.1.S1_x_at--3--5191Chr12:19865983..19866007 (25 bp)
GCAAGTGCCGCTTCGATGGTGGCTA
LOC_Os12g32930
Os.55390.1.S1_x_at--865--9171Chr12:19865978..19866002 (25 bp)
TGCCGCTTCGATGGTGGCTACGTCA
LOC_Os12g32930
Os.55390.1.S1_x_at--53--8892Chr12:19865820..19865844 (25 bp)
TGAGAAGAAGAGACTGACACATGGG
NONE
Os.55390.1.S1_x_at--917--77924Chr11:16604666..16604688 (23 bp)
GGTCTCACGCTGACTCAGCCATCGA
NONE
Os.55390.1.S1_x_at--702--9671Chr12:19865772..19865796 (25 bp)
TCAGCCATCGATGGCCGTGGTCAAA
NONE
Os.55390.1.S1_x_at--45--532Chr10:371301..371323 (23 bp)
ATCGATGGCCGTGGTCAAAGCGCCA
NONE
Os.55390.1.S1_x_at--81--8992Chr12:19865722..19865746 (25 bp)
TGAAGGGACCTCGGATGACCGGTTT
NONE
Os.55390.1.S1_x_at--948--6751Chr12:19865691..19865715 (25 bp)
GTTAAGGGACATCGCATATCTAGTT
NONE
Os.55390.1.S1_x_at--80--3555Chr09:20743884..20743903 (20 bp)
CATCGCATATCTAGTTTTGTGGTTT
NONE
Target Sequence 
TGTCCGCCACGGAGAGATCGAGTGCCGCCGCATCCTCCAGCAAGTGCCGCTTCGATGGTGGCTACGTCACCCGCTAGCCG
CCCGTGCAGCTGCGGCCCCTCCGCCTGCGCCCACCCACGCGCCGCTCTGCCGCCCGCCGCCTGCGCGCGCCGGGCGCCGC
CCGTGGAGAAGAGAGAGAGAGAGGGGAGAGGTGAAGAGGAGATGAGAAGAAGAGACTGACACATGGGGCCCACGTGGGTC
TCACGCTGACTCAGCCATCGATGGCCGTGGTCAAAGCGCCACGTAGGACAAAAACCGGGATGAAGGGACCTCGGATGACC
GGTTTTGTATAGTTAAGGGACATCGCATATCTAGTTTTGTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55390.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis