Browse Element(s) Details


Os.55494.1.S1_at

Description gb:AK108198.1
DB_XREF= gi:32993407
TID=Os.55494.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C09, full insert sequence.
FL= gb:AK108198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0569011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed
LOC_Os12g05670OsAffx.31599.1.S1_at11/1112+2601226..2601649hypothetical protein
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55494.1.S1_at--800--7731Chr12:2621545..2621569 (25 bp)
GGTGTCTCTCATGCAAAAACAAGCT
LOC_Os12g05690
Os.55494.1.S1_at--1017--4671Chr12:2621486..2621510 (25 bp)
GCGGATCAGTGTGGCAGCCTACCCT
LOC_Os12g05690
Os.55494.1.S1_at--7--3731Chr12:2621468..2621492 (25 bp)
CTACCCTGCAGAGCATACCTGAAGG
LOC_Os12g05690
Os.55494.1.S1_at--390--191Chr12:2621454..2621478 (25 bp)
ATACCTGAAGGCAGCGTTTTCTAGC
LOC_Os12g05690
Os.55494.1.S1_at--976--1631Chr12:2621442..2621466 (25 bp)
AGCGTTTTCTAGCTGCATGCAGAAC
LOC_Os12g05690
Os.55494.1.S1_at--416--6331Chr12:2621410..2621434 (25 bp)
GATGCATGCATGAATTTACCATTTT
LOC_Os12g05690
Os.55494.1.S1_at--1145--5611Chr12:2621351..2621375 (25 bp)
GACAACAAGAGCAGTCCTAGCTTAT
LOC_Os12g05690
Os.55494.1.S1_at--268--6191Chr12:2621268..2621292 (25 bp)
GAGGCAAGGATTCTCTTTGTCTTTT
LOC_Os12g05690
Os.55494.1.S1_at--828--811Chr12:2621205..2621229 (25 bp)
ATGGTCCTGGAAATCAAGCAAGATG
LOC_Os12g05690
Os.55494.1.S1_at--1038--6491Chr12:2621181..2621205 (25 bp)
GATAGTTTTATCATGCCTTCGTTCA
LOC_Os12g05690
Os.55494.1.S1_at--535--9191Chr12:2621168..2621192 (25 bp)
TGCCTTCGTTCATGCATGAGAGATT
LOC_Os12g05690
Target Sequence 
GGTGTCTCTCATGCAAAAACAAGCTGAAGCAGATGAGCTGCTGCACCAGCAGGAGAGCTGCGGATCAGTGTGGCAGCCTA
CCCTGCAGAGCATACCTGAAGGCAGCGTTTTCTAGCTGCATGCAGAACAAAGAATGATGCATGCATGAATTTACCATTTT
GGATCTCTTGAATAAGTTTATGTATGTATTCATGGACAACAAGAGCAGTCCTAGCTTATATATGTATATTAGAGAGAGAT
AGAGGGGTATATAATAGCTAGATTGATAAGGAATTTTGAGGCAAGGATTCTCTTTGTCTTTTCTTCTTGATTAAACATAT
GCATGTAAGAAGGGGTAAAGATGGTCCTGGAAATCAAGCAAGATGATAGTTTTATCATGCCTTCGTTCATGCATGAGAGA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis