Browse Element(s) Details


Os.55636.1.S1_at

Description gb:AK108452.1
DB_XREF= gi:32993661
TID=Os.55636.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C10, full insert sequence.
FL= gb:AK108452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4801011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47989NANA5+27431491..27432512NA
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48050Os.53508.1.S1_at11/115+27463712..27465515Ribosomal protein L7/L12 C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55636.1.S1_at--955--2951Chr05:27441835..27441859 (25 bp)
AAGGCCACCTTGGAGCTCTCGGCGT
LOC_Os05g48010
Os.55636.1.S1_at--926--4831Chr05:27441810..27441834 (25 bp)
GCTACTTCCCGAACATGGCGGAGAT
LOC_Os05g48010
Os.55636.1.S1_at--1069--1811Chr05:27441762..27441786 (25 bp)
ACGCCAAGCCACAGGGTCTCTGCAA
LOC_Os05g48010
Os.55636.1.S1_at--92--7171Chr05:27441747..27441771 (25 bp)
GTCTCTGCAACACCCTGACATAGGA
LOC_Os05g48010
Os.55636.1.S1_at--165--5631Chr05:27441721..27441745 (25 bp)
GACACGCTAAAACCTCCATTGAATT
LOC_Os05g48010
Os.55636.1.S1_at--1099--3591Chr05:27441705..27441729 (25 bp)
CATTGAATTCTTGCGTAGCTGCGAA
LOC_Os05g48010
Os.55636.1.S1_at--329--4651Chr05:27441660..27441684 (25 bp)
GCGTCGCCACTTGCTACTAGCATAA
LOC_Os05g48010
Os.55636.1.S1_at--197--10371Chr05:27441610..27441634 (25 bp)
TTTTTTCTCTTCTTCGAGTGGCCCA
LOC_Os05g48010
Os.55636.1.S1_at--188--6131Chr05:27441595..27441619 (25 bp)
GAGTGGCCCATTCTCTAGCTGGCGT
LOC_Os05g48010
Os.55636.1.S1_at--827--9991Chr05:27441580..27441604 (25 bp)
TAGCTGGCGTTTTCTCGTGTATTAT
LOC_Os05g48010
Os.55636.1.S1_at--285--6911Chr05:27441518..27441542 (25 bp)
GTATCTGCACTGATCCAAATTCTCC
LOC_Os05g48010
Target Sequence 
AAGGCCACCTTGGAGCTCTCGGCGTGCTACTTCCCGAACATGGCGGAGATGTGGGCGGCCTCCGACCACGCCTACGCCAA
GCCACAGGGTCTCTGCAACACCCTGACATAGGAGGACACGCTAAAACCTCCATTGAATTCTTGCGTAGCTGCGAACGCAA
CGGCGATCGATCGATGCGTCGCCACTTGCTACTAGCATAATTCTTGCTCTCTTTTTTTTTTCAATTTTTTTCTCTTCTTC
GAGTGGCCCATTCTCTAGCTGGCGTTTTCTCGTGTATTATGAGTGATCGATTATTACATGTAAATTAATCCATAGATGTA
TCTGCACTGATCCAAATTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis