Browse Element(s) Details


Os.55637.1.S1_at

Description gb:AK108457.1
DB_XREF= gi:32993666
TID=Os.55637.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D04, full insert sequence.
FL= gb:AK108457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4507011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative
LOC_Os05g45150OsAffx.27314.1.S1_at10/115+26132020..26134877Anthocyanidin 5,3-O-glucosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55637.1.S1_at--409--8091Chr05:26106903..26106927 (25 bp)
GGAGCGAGACGGACGTGTACTACAA
LOC_Os05g45070
Os.55637.1.S1_at--788--2771Chr05:26106676..26106700 (25 bp)
AAGAGCCTCGACGTTCGGATGAACT
LOC_Os05g45070
Os.55637.1.S1_at--691--671Chr05:26106658..26106682 (25 bp)
ATGAACTGCTCGGTCATCTTGGACG
LOC_Os05g45070
Os.55637.1.S1_at--267--3711Chr05:26106576..26106600 (25 bp)
CTAGGAGCGTGGATTGCGTTGCAAT
LOC_Os05g45070
Os.55637.1.S1_at--353--10711Chr05:26106563..26106587 (25 bp)
TTGCGTTGCAATCGTGAGCTGATCA
LOC_Os05g45070
Os.55637.1.S1_at--357--4751Chr05:26106546..26106570 (25 bp)
GCTGATCAGCGGTTTTCTTGTGTGA
LOC_Os05g45070
Os.55637.1.S1_at--1059--3611Chr05:26106530..26106554 (25 bp)
CTTGTGTGAGTACTGCATTGTCATT
LOC_Os05g45070
Os.55637.1.S1_at--378--7131Chr05:26106511..26106535 (25 bp)
GTCATTACAGCACCTCATTACATAT
LOC_Os05g45070
Os.55637.1.S1_at--30--6291Chr05:26106469..26106493 (25 bp)
GATGTATATTCTGCTACTCTCGTAT
LOC_Os05g45070
Os.55637.1.S1_at--660--10431Chr05:26106423..26106447 (25 bp)
TTATGCTACTTTCGTGTGTTCACAG
LOC_Os05g45070
Os.55637.1.S1_at--178--7431Chr05:26106408..26106432 (25 bp)
GTGTTCACAGATCGAATTCTCTCTA
LOC_Os05g45070
Target Sequence 
GGAGCGAGACGGACGTGTACTACAAGGGGAAGACGGTGAGCGTGGCGTACGTCCCCGCCGGCAGCGTCGGCGCCGACCGG
ACGGTGCGGATGAACATCACGCTCGACCTGCTCGCCGACCGCCTCGCGTCGGTGCTCAACGGCACGGGGCTGATACTCGG
GCAGGAGTACGACCTGACCACCTACACGGCGATGAGGGCGAGGGTCAGCGTGCTGGGGATCATCAAGAAGAGCCTCGACG
TTCGGATGAACTGCTCGGTCATCTTGGACGTCGCCGGCATCGCCGGCGTGCTGCTGCCCGGGGACGGGGCCAAGTCGGGC
GTGCAGACTAGGAGCGTGGATTGCGTTGCAATCGTGAGCTGATCAGCGGTTTTCTTGTGTGAGTACTGCATTGTCATTAC
AGCACCTCATTACATATGAATATGTATTTTTCTGGATGTATATTCTGCTACTCTCGTATGTATGTTTTTCTGGATATATA
TTATGCTACTTTCGTGTGTTCACAGATCGAATTCTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis